View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_285 (Length: 229)
Name: NF9595A_low_285
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_285 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 240070 - 240293
Alignment:
| Q |
5 |
caaaagtattgttatagagacccaattggagaaaattgaacaagaaaagaagaacgaggatgatgataatgaggaaaaggataaaagtgaggaacctatc |
104 |
Q |
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| T |
240070 |
caaaagtattgttatagagacccaattggagaaaattgaacaagaaaagaagaacaaggatgatgataatgaggaaaaggataaaagtgaggaacctatc |
240169 |
T |
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| Q |
105 |
ggttgtggagtttaaatgnnnnnnnattagttaattatgttgttgtttcgtgagcactactatggccacgatatcttctactttaatttcatttagttgt |
204 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
240170 |
ggttgtggagtttaaatgttttttt-ttagttaattatgttgttgtttcgtgagcactactatggccacgatatcttctactttaatttcatttagttgt |
240268 |
T |
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| Q |
205 |
agttacatgcatgcatgtgctagtg |
229 |
Q |
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|| |||||||||||||||||||||| |
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| T |
240269 |
agctacatgcatgcatgtgctagtg |
240293 |
T |
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