View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_288 (Length: 229)

Name: NF9595A_low_288
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_288
NF9595A_low_288
[»] chr5 (1 HSPs)
chr5 (1-223)||(24639287-24639509)
[»] chr1 (1 HSPs)
chr1 (1-223)||(52491257-52491479)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24639509 - 24639287
Alignment:
Q  1 gtgaatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24639509 gtgaatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacct 24639410  T
Q  101 aaaagatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24639409 aaaagatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatca 24639310  T
Q  201 attctacattgtttcctacatat 223  Q
    |||||||||||||||||||||||    
T  24639309 attctacattgtttcctacatat 24639287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52491257 - 52491479
Alignment:
Q  1 gtgaatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52491257 gtgaatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacct 52491356  T
Q  101 aaaagatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52491357 aaaagatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatca 52491456  T
Q  201 attctacattgtttcctacatat 223  Q
    |||||||||||||||||||||||    
T  52491457 attctacattgtttcctacatat 52491479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University