View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_290 (Length: 228)
Name: NF9595A_low_290
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_290 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4302065 - 4302284
Alignment:
| Q |
1 |
agcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttgttgtcaagcctaca |
100 |
Q |
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| T |
4302065 |
agcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacaccagacgatgtattttccaagcgtttgttgtcaagcctaca |
4302164 |
T |
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| Q |
101 |
ccatttgaagcaaattcatgacagatatcaccatatggacacattcctataagagaagttctaggtgcagtagtcttggttgataaggcttcaattcata |
200 |
Q |
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| T |
4302165 |
ccatttgaagcaaattcatgacagatatcaccatatggacacattcc--taagagaagttctaggtgcagtagtcttggttgataaggcttcaattcata |
4302262 |
T |
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| Q |
201 |
tcctaaatggaactgcacttgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4302263 |
tcctaaatggaactgcacttgt |
4302284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 49100586 - 49100456
Alignment:
| Q |
8 |
agtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttgttgtcaagcctacaccatttg |
107 |
Q |
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| T |
49100586 |
agtgagtttgtttgcaacgtttataggtaggctgcacgggacaagaaaaacaccagaggttgcattttccaagcgtctgttgtcaagcctataccatttg |
49100487 |
T |
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| Q |
108 |
aagcaaattcatgacagatatcaccatatgg |
138 |
Q |
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| T |
49100486 |
aagcaaattcatgacagatatcaccatatgg |
49100456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 49112387 - 49112250
Alignment:
| Q |
1 |
agcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttgttgtcaagcctaca |
100 |
Q |
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|||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| | ||| ||| ||||| || | |||||||||||| | |
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| T |
49112387 |
agcgccaagtgagttcatttgcaactattataggtagattagaagggacaagaaaaacatcagaggttgtgtttaccaagagtctattgtcaagcctaaa |
49112288 |
T |
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| Q |
101 |
ccatttgaagcaaattcatgacagatatcaccatatgg |
138 |
Q |
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| T |
49112287 |
ccgtttgaagcaaaccaataacagatattaccatatgg |
49112250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 49100306 - 49100251
Alignment:
| Q |
137 |
ggacacattcctataagagaagttctaggtgcagtagtcttggttgataaggcttcaa |
194 |
Q |
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| T |
49100306 |
ggacacattcctag--gagaaattctaggtgcagtagtcttggctgaaaaggcttcaa |
49100251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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