View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_294 (Length: 228)

Name: NF9595A_low_294
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_294
NF9595A_low_294
[»] chr4 (2 HSPs)
chr4 (2-217)||(17454879-17455094)
chr4 (1-217)||(15092444-15092660)
[»] chr2 (3 HSPs)
chr2 (1-223)||(20468072-20468294)
chr2 (1-223)||(27069258-27069480)
chr2 (133-217)||(33347020-33347104)
[»] chr5 (2 HSPs)
chr5 (1-223)||(42762176-42762398)
chr5 (99-211)||(20584685-20584797)
[»] chr7 (1 HSPs)
chr7 (33-205)||(5613873-5614045)
[»] scaffold0007 (1 HSPs)
scaffold0007 (55-205)||(237680-237830)
[»] chr6 (2 HSPs)
chr6 (99-217)||(21695810-21695928)
chr6 (136-211)||(10512842-10512917)
[»] chr1 (1 HSPs)
chr1 (78-206)||(25597791-25597919)
[»] chr3 (3 HSPs)
chr3 (99-217)||(8971338-8971456)
chr3 (117-217)||(34932157-34932257)
chr3 (33-217)||(2436532-2436716)
[»] chr8 (2 HSPs)
chr8 (117-217)||(28164908-28165008)
chr8 (133-217)||(26384278-26384362)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 17454879 - 17455094
Alignment:
Q  2 taaaactcattgtcacaaaattcaaacagagattgaacattgcagaaagcaactcagcagatgtcgtactatccatggtatccaagatgaagcttacttt 101  Q
    ||||||||||||  ||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  17454879 taaaactcattgcaacaaacttcaaacaaatattgaacattgcagaaagcaactcagcagatgtcgtactatccacggtatccaggatgaggcttacttt 17454978  T
Q  102 gataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaata 201  Q
    |||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  17454979 gataatctcaggcagaaacttaatcatttgctgcttcaagaggatatgttttggcgacaaagagctaaaaatcattggtaccgagacggagacctgaata 17455078  T
Q  202 caaaattcttccatgc 217  Q
    |||| |||||||||||    
T  17455079 caaagttcttccatgc 17455094  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 15092660 - 15092444
Alignment:
Q  1 gtaaaactcattgtcacaaaattcaaacagagattgaacattgcagaaagcaactcagcagatgtcgtactatccatggtatccaagatgaagcttactt 100  Q
    |||||||  ||||| ||||| |||||||| | |||||| | ||  |||| || ||||| |||||||| || |||||||| ||||||||||| | | | ||    
T  15092660 gtaaaacctattgtaacaaacttcaaacaaacattgaaaaatgtcgaaaacatctcagtagatgtcgcaccatccatggaatccaagatgaggttcagtt 15092561  T
Q  101 tgataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaat 200  Q
    ||||||| ||||| | ||||| || || || ||| |||||||||| |||| |||| ||||  |||| |||| ||||||||| || ||  ||||||| |||    
T  15092560 tgataatctgaggaaaaaactcaaccaattactagttcaagaggacatgtattggagacagggagctaaaactcattggtatcgtgacagagacctaaat 15092461  T
Q  201 acaaaattcttccatgc 217  Q
    ||||| ||||| |||||    
T  15092460 acaaagttctttcatgc 15092444  T

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Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20468072 - 20468294
Alignment:
Q  1 gtaaaactcattgtcacaaaattcaaacagagattgaacattgcagaaagcaactcagcagatgtcgtactatccatggtatccaagatgaagcttactt 100  Q
    ||||| |||| ||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||| |||| ||    
T  20468072 gtaaatctcactgtcacaaaatacaaacagatattgaacattgcagaaagcaactcaatagatgtcgtactacccatggtatccaggatgaaacttattt 20468171  T
Q  101 tgataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaat 200  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  20468172 tgataatatgaggcagaaacttgatcatttgctagtccaagaggatatgttctggcgacaaagagccaaaaatcattggtaccgagatggagacctgaac 20468271  T
Q  201 acaaaattcttccatgcaacagc 223  Q
    ||||||||||| |||||| ||||    
T  20468272 acaaaattctttcatgcagcagc 20468294  T

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Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27069258 - 27069480
Alignment:
Q  1 gtaaaactcattgtcacaaaattcaaacagagattgaacattgcagaaagcaactcagcagatgtcgtactatccatggtatccaagatgaagcttactt 100  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||| | || ||    
T  27069258 gtaaaactcattgtcacaaaatacaaacagacattgaacattgcagaaagcaactcaatagatgtcgtactacccatggtatccaggatgaaacgtattt 27069357  T
Q  101 tgataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaat 200  Q
    |||||||||||||||||||||| ||||| || || | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  27069358 tgataatatgaggcagaaacttgatcatctgttagtccaagaggatatgttctggcgacaaagagccaaaaaacattggtaccgagatggagacctgaat 27069457  T
Q  201 acaaaattcttccatgcaacagc 223  Q
    ||||||||||| |||||| ||||    
T  27069458 acaaaattctttcatgcagcagc 27069480  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 33347020 - 33347104
Alignment:
Q  133 taattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaatacaaaattcttccatgc 217  Q
    ||||||||||||||   |||||||| |||||||| || | ||| ||||  || ||||||||||| ||||| || |||||||||||    
T  33347020 taattcaagaggatgctttttggcgtcaaagagcaaagactcaatggttacgggatggagaccttaatactaagttcttccatgc 33347104  T

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Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42762176 - 42762398
Alignment:
Q  1 gtaaaactcattgtcacaaaattcaaacagagattgaacattgcagaaagcaactcagcagatgtcgtactatccatggtatccaagatgaagcttactt 100  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||   ||||||||||||| |||||||||||| |||||| | || ||    
T  42762176 gtaaaactcattgtcacaaaatacaaacagacattgaacattgcagaaagcaactccatagatgtcgtactacccatggtatccaggatgaaacgtattt 42762275  T
Q  101 tgataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaat 200  Q
    ||||||||||||| |||||||| ||||| ||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  42762276 tgataatatgaggaagaaacttgatcatctgctagtccaagaggatatgttctggcgacaaagagccaaaaagcattggtaccgagatggagacctgaat 42762375  T
Q  201 acaaaattcttccatgcaacagc 223  Q
    ||||||||||| |||||| ||||    
T  42762376 acaaaattctttcatgcagcagc 42762398  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 20584685 - 20584797
Alignment:
Q  99 tttgataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctga 198  Q
    ||||||||| ||||||| || ||| ||||| | ||  | ||||||||||||| |||||||||||||||||||| ||| ||||| || |||||| || |||    
T  20584685 tttgataatttgaggcaaaagctttatcatctacttctacaagaggatatgtattggcgacaaagagccaaaactcactggtatcgcgatggatacttga 20584784  T
Q  199 atacaaaattctt 211  Q
    | || ||||||||    
T  20584785 acacgaaattctt 20584797  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 5614045 - 5613873
Alignment:
Q  33 attgaacattgcagaaagcaactcagcagatgtcgtactatccatggtatccaagatgaagcttactttgataatatgaggcagaaacttaatcatttgc 132  Q
    |||||||| || || || ||||||||||||||||||||||||||||| ||||||||||| | | | ||||||||| | ||||| ||||| || ||  ||     
T  5614045 attgaacaatgtaggaaacaactcagcagatgtcgtactatccatggaatccaagatgaggttcattttgataatcttaggcaaaaactcaaccaaatgt 5613946  T
Q  133 taattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaatacaaa 205  Q
    |  ||||||||||||||| |||| ||||| |||| |||| ||||||||| || || ||||||||||| |||||    
T  5613945 tggttcaagaggatatgtattggagacaacgagctaaaactcattggtatcgcgacggagacctgaacacaaa 5613873  T

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Target: scaffold0007 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 205
Target Start/End: Complemental strand, 237830 - 237680
Alignment:
Q  55 tcagcagatgtcgtactatccatggtatccaagatgaagcttactttgataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttg 154  Q
    |||| |||||||| || |||||||||||||||||||| | | |  |||||||| ||||||| ||||| || ||  | ||| |||||||||| |||| |||    
T  237830 tcagtagatgtcgcaccatccatggtatccaagatgaggttcatgttgataatctgaggcaaaaactcaaccaactactagttcaagaggacatgtattg 237731  T
Q  155 gcgacaaagagccaaaaatcattggtaccgagatggagacctgaatacaaa 205  Q
    | |||| |||||||||| ||||||||| || || |||||||| ||||||||    
T  237730 gagacagagagccaaaactcattggtatcgtgacggagacctaaatacaaa 237680  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 21695810 - 21695928
Alignment:
Q  99 tttgataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctga 198  Q
    ||||||||| ||||||| |||||||||||||| ||  | |||||||||||||  ||| ||||||||||||||| ||| ||||| || ||||||||  |||    
T  21695810 tttgataatttgaggcaaaaacttaatcatttacttgtgcaagaggatatgtactggtgacaaagagccaaaactcactggtatcgtgatggagatttga 21695909  T
Q  199 atacaaaattcttccatgc 217  Q
    |||| | |||||| |||||    
T  21695910 atacgagattctttcatgc 21695928  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 10512842 - 10512917
Alignment:
Q  136 ttcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaatacaaaattctt 211  Q
    |||||||||||||||  ||| |||| ||||| |||| |||||| || || |||||||||||||| || ||||||||    
T  10512842 ttcaagaggatatgtactggagacagagagctaaaactcattgatatcgtgatggagacctgaacacgaaattctt 10512917  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 25597919 - 25597791
Alignment:
Q  78 ggtatccaagatgaagcttactttgataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcatt 177  Q
    |||||||||||||| | | | ||||||||| ||||||| ||||| |||||  |  | ||||||||||||||||  ||  ||||||||||||||| |||||    
T  25597919 ggtatccaagatgaggttcagtttgataatctgaggcaaaaactcaatcaactaatcattcaagaggatatgtactgaagacaaagagccaaaactcatt 25597820  T
Q  178 ggtaccgagatggagacctgaatacaaaa 206  Q
    |||| || |||||||| || |||||||||    
T  25597819 ggtatcgtgatggagatctaaatacaaaa 25597791  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 8971456 - 8971338
Alignment:
Q  99 tttgataatatgaggcagaaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctga 198  Q
    ||||||||| ||||||| || ||||||||| ||||  | ||||| || |||| |||||| |||||||||||||  || ||||| || || |||||| |||    
T  8971456 tttgataatttgaggcaaaagcttaatcatctgcttgtacaagaagacatgtattggcgtcaaagagccaaaacccactggtatcgcgacggagacttga 8971357  T
Q  199 atacaaaattcttccatgc 217  Q
    |||| ||||||||||||||    
T  8971356 atacgaaattcttccatgc 8971338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 34932157 - 34932257
Alignment:
Q  117 aaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaatacaaaattcttccatg 216  Q
    ||||| || ||||||||  | ||||||||||||| |||| |||| ||||| ||||  || | ||| || |||||||||||||| ||||||||||||||||    
T  34932157 aaactcaaccatttgcttgtccaagaggatatgtattggagacagagagctaaaacgcacttgtatcgtgatggagacctgaacacaaaattcttccatg 34932256  T
Q  217 c 217  Q
    |    
T  34932257 c 34932257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 217
Target Start/End: Original strand, 2436532 - 2436716
Alignment:
Q  33 attgaacattgcagaaagcaactcagcagatgtcgtactatccatggtatccaagatgaagcttactttgataatatgaggcagaaacttaatcatttgc 132  Q
    ||||||||||| ||||| |||||  | |||  |||||||   ||||| ||||| |||||| || | ||||| ||| |||| || ||||| ||||| ||||    
T  2436532 attgaacattgtagaaaacaacttgggagaaatcgtacttctcatggaatccaggatgaaactcaatttgacaatttgagacaaaaactcaatcacttgc 2436631  T
Q  133 taattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaatacaaaattcttccatgc 217  Q
    |  ||||||| || ||||  ||| | || ||||| || |  || |||||||| ||||||||||| || ||||||||||| |||||    
T  2436632 ttgttcaagaagacatgtactggaggcagagagctaagacacactggtaccgtgatggagaccttaacacaaaattctttcatgc 2436716  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 28165008 - 28164908
Alignment:
Q  117 aaacttaatcatttgctaattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaatacaaaattcttccatg 216  Q
    ||||| || ||||||||  ||||||||||||||| |||| |||| ||||| ||||  || ||||| || ||||||||||| || || ||| |||||||||    
T  28165008 aaactcaaccatttgcttgttcaagaggatatgtattggagacagagagctaaaacacactggtatcgtgatggagacctaaacaccaaaatcttccatg 28164909  T
Q  217 c 217  Q
    |    
T  28164908 c 28164908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 26384362 - 26384278
Alignment:
Q  133 taattcaagaggatatgttttggcgacaaagagccaaaaatcattggtaccgagatggagacctgaatacaaaattcttccatgc 217  Q
    ||||||||||||||   |||||||| |||||||| || | ||| ||||  || ||||||||||| ||||| || |||||||||||    
T  26384362 taattcaagaggatgctttttggcgtcaaagagcgaagactcactggttacgggatggagaccttaatacgaagttcttccatgc 26384278  T

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