View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_298 (Length: 227)
Name: NF9595A_low_298
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_298 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29685165 - 29684939
Alignment:
| Q |
1 |
tcataaaaaaccacacatctaaaataatgatattagaattgcaaagaaatcaaaagaaaacaacttatattcatggttcagcacaaaatcctacttctgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29685165 |
tcataaaaaaccacacatctaaaataatgatattagaattgcaaagaaatcaaaagaaaacaacttatattcatggttcagcacaaaatcctacttctgc |
29685066 |
T |
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| Q |
101 |
ccccaacttcaaaatcgtctacacacttcaaatctggaccaaaatcaatgaaactggtaccaaaacgtccagaatttcgttagctaaccatagcatcaaa |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
29685065 |
ccccaacttcaaaatcgtctacagacttcaaatctggaccaaaatcaatgaaactggtaccaaaacgtccggaatttcgttatctaaccatagcatcaaa |
29684966 |
T |
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| Q |
201 |
aatcacttgattccaagttacagggag |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
29684965 |
aatcacttgattccaagttacagggag |
29684939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25718148 - 25717922
Alignment:
| Q |
1 |
tcataaaaaaccacacatctaaaataatgatattagaattgcaaagaaatcaaaagaaaacaacttatattcatggttcagcacaaaatcctacttctgc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25718148 |
tcataaaaaaccacacatctaaaacaatgatattagaattgcaaagaaatcaaaagaaaacaacttatattcatggttcagcacaaaatcctacttctgc |
25718049 |
T |
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| Q |
101 |
ccccaacttcaaaatcgtctacacacttcaaatctggaccaaaatcaatgaaactggtaccaaaacgtccagaatttcgttagctaaccatagcatcaaa |
200 |
Q |
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| T |
25718048 |
ccccaacttcaaaatcgtctacagacttcaaatctggaccaaaaacaatgaaactggtacgaaaacgtccggaatttcgttagctaaccatagcatcaaa |
25717949 |
T |
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| Q |
201 |
aatcacttgattccaagttacagggag |
227 |
Q |
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| T |
25717948 |
aatcacttgattccaagttacagggag |
25717922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 19053370 - 19053200
Alignment:
| Q |
57 |
aaaacaacttatattcatggttcagcacaaaatcctacttctgcccccaacttcaaaatcgtctacacacttcaaatctggaccaaaatcaatgaaactg |
156 |
Q |
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| T |
19053370 |
aaaacaacttatattcatggttcagcacaaaatcctacttctgcccccaacttcaaaatcgtctacagacttcaaatctggaccaaaatcaatgaaactg |
19053271 |
T |
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| Q |
157 |
gtaccaaaacgtccagaatttcgttagctaaccatagcatcaaaaatcacttgattccaagttacagggag |
227 |
Q |
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| T |
19053270 |
gtaccaaaacgtccagaatttcgttagctaaccatagcatcaaaaatcacttgattccaagttacagggag |
19053200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 17146782 - 17146617
Alignment:
| Q |
57 |
aaaacaacttatattcatggttcagcacaaaatcctacttctgcccccaacttcaaaatcgtctacacacttcaaatctggaccaaaatcaatgaaactg |
156 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||||||| |||||||| |
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| T |
17146782 |
aaaacaactcatattcatggttcagcacaaaatcctacttctgcccccaaattcaaaatcgtctacagagttcaatactggaccaaaatcagtgaaactg |
17146683 |
T |
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| Q |
157 |
gtaccaaaacgtccagaatttcgttagctaaccatagcatcaaaaatcacttgattccaagttaca |
222 |
Q |
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|||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||| |||| |
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| T |
17146682 |
gtaccaaaacgtccggaatttcgttatctaaccgtagcattaaaaatcacttgattccaagctaca |
17146617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 20919053 - 20918992
Alignment:
| Q |
148 |
atgaaactggtaccaaaacgtccagaatttcgttagctaaccatagcatcaaaaatcacttg |
209 |
Q |
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| T |
20919053 |
atgaaactggtaccaaaatgtcgaaaatttcgttagctatcaatagcaacaacaaccacttg |
20918992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 22806701 - 22806871
Alignment:
| Q |
59 |
aacaacttatattcatggttcagcacaaa------atcctacttctgcccccaacttcaaaatcgtctacacacttcaaatctggaccaaaatcaatgaa |
152 |
Q |
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||||||| ||||||||||||||||||||| | | ||||||||||||||||||||||||||||| || ||||||| |||| ||||| ||||| || |
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| T |
22806701 |
aacaactcatattcatggttcagcacaaagcacaaaacatacttctgcccccaacttcaaaatcgtctccagacttcaatactgggccaaattcaataaa |
22806800 |
T |
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| Q |
153 |
actggtaccaaaacgtccagaatttcgttagctaaccatagcatcaaaaatcacttgattccaagttacag |
223 |
Q |
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| T |
22806801 |
actggtaccaaaacgtccgtaatttcgttatctaaccatagcattaaaaatcacttgattccaagttacag |
22806871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 380212 - 380137
Alignment:
| Q |
148 |
atgaaactggtaccaaaacgtccagaatttcgttagctaaccatagcatcaaaaatcacttgattccaagttacag |
223 |
Q |
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||||||| | |||||||| ||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| |
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| T |
380212 |
atgaaaccgataccaaaatgtcgggaatttcgttagctaaccatagcaacaaagttcacgtgatttgaagttacag |
380137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 38226 - 38347
Alignment:
| Q |
106 |
acttcaaaatcgtctacacacttcaaatctggaccaaaatcaatgaaactggtaccaaaacgtccagaatttcgttagctaaccatagcatcaaaaatca |
205 |
Q |
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||||||||| | ||| || ||||||| ||| |||| |||| ||||| ||||||||||| |||| ||||| |||| | |||||||||||||||||||| |
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| T |
38226 |
acttcaaaaccatctccatacttcaattcttgaccgaaattcgtgaaaatggtaccaaaatgtccgtaattttgttatcgaaccatagcatcaaaaatca |
38325 |
T |
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| Q |
206 |
cttgattccaagttacagggag |
227 |
Q |
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||||||||| |||||||||||| |
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| T |
38326 |
cttgattccgagttacagggag |
38347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 14801501 - 14801380
Alignment:
| Q |
106 |
acttcaaaatcgtctacacacttcaaatctggaccaaaatcaatgaaactggtaccaaaacgtccagaatttcgttagctaaccatagcatcaaaaatca |
205 |
Q |
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||||||||| | ||| || ||||||| ||| |||| |||| ||||| ||||||||||| |||| ||||| |||| | |||||||||||||||||||| |
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| T |
14801501 |
acttcaaaaccatctccatacttcaattcttgaccgaaattcgtgaaaatggtaccaaaatgtccgtaattttgttatcgaaccatagcatcaaaaatca |
14801402 |
T |
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| Q |
206 |
cttgattccaagttacagggag |
227 |
Q |
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||||||||| |||||||||||| |
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| T |
14801401 |
cttgattccgagttacagggag |
14801380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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