View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_299 (Length: 227)

Name: NF9595A_low_299
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_299
NF9595A_low_299
[»] chr7 (1 HSPs)
chr7 (1-221)||(968194-968414)
[»] chr8 (1 HSPs)
chr8 (175-222)||(31216869-31216916)
[»] chr4 (2 HSPs)
chr4 (159-221)||(8655435-8655497)
chr4 (159-221)||(47540641-47540703)
[»] chr1 (4 HSPs)
chr1 (159-221)||(48266080-48266142)
chr1 (159-221)||(21527877-21527939)
chr1 (160-218)||(30970971-30971029)
chr1 (160-221)||(36305500-36305561)
[»] chr5 (2 HSPs)
chr5 (160-221)||(6020454-6020515)
chr5 (159-221)||(10487268-10487330)
[»] chr2 (1 HSPs)
chr2 (178-218)||(31774403-31774443)
[»] chr6 (1 HSPs)
chr6 (159-221)||(1682762-1682824)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 968414 - 968194
Alignment:
Q  1 ttatgaacaattgtgttctctgatttttcttggaaatattttttgaacttgaagagaacttgaataaaaccttggctatgatgctatatttgttgttatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  968414 ttatgaacaattgtgttctctgatttttcttggaaatattttttgaacttgaagagaacttgaataaaaccttggctatgatgctatatttgttgttatg 968315  T
Q  101 tgatagttgattcaaatgagttgaacccaaaaaactagttaataaattttttaaaacattggctcctctgtgtctgggttgtgtggaatgagcgcaatag 200  Q
     ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  968314 agatagttgattcaaatgagttgaacccaaaaaactagttaatagaatttttaaaaccttggctcctctgtgtttgggttgtgtggaatgagcgcaatag 968215  T
Q  201 tcgcttgtttaaaaatgtaat 221  Q
    |||||||||||||||||||||    
T  968214 tcgcttgtttaaaaatgtaat 968194  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 31216869 - 31216916
Alignment:
Q  175 tgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgtaatt 222  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  31216869 tgggttgtgtggaatgagcgcaatagtcgcttgttttaaaatgtaatt 31216916  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 8655435 - 8655497
Alignment:
Q  159 ttggctcctctgtgtctgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgtaat 221  Q
    |||||| ||||||| ||||||||||||||||||||| |||| |||| ||||||| ||||||||    
T  8655435 ttggcttctctgtgcctgggttgtgtggaatgagcgaaataatcgcctgtttaataatgtaat 8655497  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 47540703 - 47540641
Alignment:
Q  159 ttggctcctctgtgtctgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgtaat 221  Q
    |||||| ||||||| |||||||||||||||||| || |||| |||  ||||||| ||||||||    
T  47540703 ttggcttctctgtgcctgggttgtgtggaatgaacgaaataatcgtctgtttaataatgtaat 47540641  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 48266080 - 48266142
Alignment:
Q  159 ttggctcctctgtgtctgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgtaat 221  Q
    |||||| ||||||||||||||||||||||||||||| |||| |||  ||||||| ||||||||    
T  48266080 ttggcttctctgtgtctgggttgtgtggaatgagcgaaataatcgtctgtttaataatgtaat 48266142  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 21527939 - 21527877
Alignment:
Q  159 ttggctcctctgtgtctgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgtaat 221  Q
    |||||| ||||||| ||||||||||||||||||||| |||| |||  ||||||| ||||||||    
T  21527939 ttggcttctctgtgcctgggttgtgtggaatgagcgaaataatcgactgtttaataatgtaat 21527877  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 30970971 - 30971029
Alignment:
Q  160 tggctcctctgtgtctgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgt 218  Q
    |||||||| ||||  |||||||||||| |||||||||||||||| |||||||| |||||    
T  30970971 tggctcctttgtgcttgggttgtgtggcatgagcgcaatagtcgattgtttaacaatgt 30971029  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 36305561 - 36305500
Alignment:
Q  160 tggctcctctgtgtctgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgtaat 221  Q
    ||||| || ||||||||||||||||||||||| || |||| |||  ||||||| ||||||||    
T  36305561 tggctactttgtgtctgggttgtgtggaatgaacgaaataatcgtctgtttaataatgtaat 36305500  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 6020515 - 6020454
Alignment:
Q  160 tggctcctctgtgtctgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgtaat 221  Q
    |||||||| | |||||||||||||||||||||||| |||| |||||||||||| ||| ||||    
T  6020515 tggctcctttatgtctgggttgtgtggaatgagcgtaataatcgcttgtttaataatataat 6020454  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 10487268 - 10487330
Alignment:
Q  159 ttggctcctctgtgtctgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgtaat 221  Q
    |||||| || |||| ||||||||||||||||||||| |||| |||  ||||||| ||||||||    
T  10487268 ttggcttctttgtgcctgggttgtgtggaatgagcgaaataatcgtctgtttaataatgtaat 10487330  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 31774443 - 31774403
Alignment:
Q  178 gttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgt 218  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  31774443 gttgtgtggaatgagggcaatagtcgcttgtttaaaaatgt 31774403  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 1682824 - 1682762
Alignment:
Q  159 ttggctcctctgtgtctgggttgtgtggaatgagcgcaatagtcgcttgtttaaaaatgtaat 221  Q
    |||||| ||||||| |||||||||||||||||| || |||| |||  ||||||| ||||||||    
T  1682824 ttggcttctctgtgcctgggttgtgtggaatgaacgaaataatcgtctgtttaataatgtaat 1682762  T

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