View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_30 (Length: 408)
Name: NF9595A_low_30
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_30 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 180 - 408
Target Start/End: Complemental strand, 49124171 - 49123943
Alignment:
| Q |
180 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag |
279 |
Q |
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| T |
49124171 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag |
49124072 |
T |
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| Q |
280 |
tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca |
379 |
Q |
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| T |
49124071 |
tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca |
49123972 |
T |
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| Q |
380 |
aagtattttattcaccaaagtttcttatc |
408 |
Q |
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| T |
49123971 |
aagtattttattcaccaaagtttcttatc |
49123943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 49124390 - 49124225
Alignment:
| Q |
22 |
cttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag |
121 |
Q |
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| T |
49124390 |
cttggaatgtagttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactgttaacaaattaatgaacaattccgattggag |
49124291 |
T |
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| Q |
122 |
aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
187 |
Q |
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| T |
49124290 |
aagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
49124225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 4271421 - 4271528
Alignment:
| Q |
239 |
cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag |
338 |
Q |
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|||||| ||| ||||||| |||||||| || |||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4271421 |
cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag |
4271520 |
T |
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| Q |
339 |
gtaaaaaa |
346 |
Q |
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| T |
4271521 |
gtaaaaaa |
4271528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 2807765 - 2807872
Alignment:
| Q |
239 |
cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag |
338 |
Q |
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| T |
2807765 |
cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag |
2807864 |
T |
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| Q |
339 |
gtaaaaaa |
346 |
Q |
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| T |
2807865 |
gtaaaaaa |
2807872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
| Q |
38 |
ggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
86 |
Q |
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| T |
11683266 |
ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca |
11683218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 18988475 - 18988416
Alignment:
| Q |
27 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
86 |
Q |
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| T |
18988475 |
aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
18988416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 30341290 - 30341349
Alignment:
| Q |
27 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
86 |
Q |
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| T |
30341290 |
aatgtagttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca |
30341349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 23917049 - 23917108
Alignment:
| Q |
27 |
aatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
86 |
Q |
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|||||||||| |||| ||||||| ||||| |||||||||| | |||| |||||||||||| |
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| T |
23917049 |
aatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
23917108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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