View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_300 (Length: 227)
Name: NF9595A_low_300
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_300 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 44560121 - 44559966
Alignment:
| Q |
1 |
aaaacaaacatatgcaatctaccaacagttaatttgaagtttcataagtggttggagacnnnnnnnn--cattaatcaatcattcattcatccaaataaa |
98 |
Q |
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| T |
44560121 |
aaaacaaacctatgcagtctaccaacagttaatttgaagtttcataagtggttggagacaaaaaaaaaacattaatcaatcattcattcatccaaataaa |
44560022 |
T |
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| Q |
99 |
cctaaccattagtagacattcccaaaaaagcaacacaagcaaagttcaattaattt |
154 |
Q |
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| T |
44560021 |
cctaaccattagtagacattcacaaaaaagcaacaaaagcaaagttcaattaattt |
44559966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 44559946 - 44559891
Alignment:
| Q |
173 |
tagtgagaaggatttgaataataataata------cccattccaagtgctgagagt |
222 |
Q |
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| T |
44559946 |
tagtgagaaggatttgaataataataataataatacccattccaagtgctgagagt |
44559891 |
T |
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