View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_305 (Length: 225)
Name: NF9595A_low_305
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_305 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 42779557 - 42779693
Alignment:
| Q |
5 |
caaactcccatgaaacaaagatacaaatccaacaaaacgcacacggcagtcccaaaaaatacagactaaatgaaagcaatgacaacaactagatcaaaat |
104 |
Q |
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| T |
42779557 |
caaactcgcatgaaacaaagatacaaatccaacaaaacgcacacggcagtcccaaaaaatacagactaaatgaaagcaatgacaacaactaaatcaaaat |
42779656 |
T |
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| Q |
105 |
caacgtaactagatgctaggaacaagtacttcgtagc |
141 |
Q |
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| T |
42779657 |
caacgtaactagatgctaggaacaagtacttcgtagc |
42779693 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 29555017 - 29554977
Alignment:
| Q |
98 |
tcaaaatcaacgtaactagatgctaggaacaagtacttcgt |
138 |
Q |
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| T |
29555017 |
tcaaaatcaacataactagatgccaggaacaagtacttcgt |
29554977 |
T |
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