View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_31 (Length: 397)

Name: NF9595A_low_31
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_31
NF9595A_low_31
[»] chr1 (31 HSPs)
chr1 (22-216)||(50767536-50767747)
chr1 (217-390)||(20302198-20302372)
chr1 (217-390)||(51752104-51752278)
chr1 (217-390)||(13761577-13761750)
chr1 (217-390)||(51749778-51749952)
chr1 (245-390)||(6823651-6823797)
chr1 (217-390)||(10400196-10400369)
chr1 (250-389)||(28840451-28840590)
chr1 (225-364)||(16225895-16226034)
chr1 (250-391)||(15823319-15823460)
chr1 (217-359)||(47179428-47179570)
chr1 (250-389)||(28842266-28842405)
chr1 (217-364)||(47177078-47177224)
chr1 (217-334)||(6822775-6822893)
chr1 (217-355)||(23783238-23783376)
chr1 (216-322)||(20291279-20291386)
chr1 (250-390)||(13214854-13214994)
chr1 (245-334)||(16231369-16231458)
chr1 (250-387)||(3579989-3580126)
chr1 (274-391)||(41646717-41646834)
chr1 (320-364)||(23783362-23783406)
chr1 (217-299)||(47451405-47451488)
chr1 (270-388)||(30790764-30790882)
chr1 (324-390)||(28207434-28207500)
chr1 (269-388)||(39462310-39462429)
chr1 (250-334)||(49687334-49687418)
chr1 (342-390)||(14098337-14098385)
chr1 (342-390)||(49687405-49687453)
chr1 (337-388)||(47451508-47451559)
chr1 (250-299)||(38925915-38925965)
chr1 (310-359)||(13449947-13449996)
[»] chr4 (39 HSPs)
chr4 (219-388)||(51015042-51015211)
chr4 (217-390)||(11006607-11006781)
chr4 (217-390)||(9176862-9177035)
chr4 (225-388)||(37089742-37089906)
chr4 (217-364)||(16932213-16932360)
chr4 (217-390)||(9174512-9174684)
chr4 (225-389)||(24888598-24888762)
chr4 (217-390)||(36919953-36920125)
chr4 (214-391)||(36921860-36922036)
chr4 (215-364)||(22783170-22783319)
chr4 (219-387)||(22803102-22803270)
chr4 (217-389)||(38408993-38409165)
chr4 (215-359)||(16934572-16934716)
chr4 (217-390)||(3824939-3825112)
chr4 (217-387)||(5637837-5638006)
chr4 (250-388)||(22044757-22044897)
chr4 (254-389)||(31849966-31850101)
chr4 (217-364)||(22780805-22780952)
chr4 (274-390)||(11008958-11009075)
chr4 (217-334)||(7941133-7941251)
chr4 (217-334)||(11434769-11434887)
chr4 (217-390)||(18846923-18847098)
chr4 (269-389)||(5198266-5198386)
chr4 (250-390)||(48486146-48486286)
chr4 (250-355)||(9148087-9148192)
chr4 (271-391)||(24880299-24880419)
chr4 (250-334)||(22801262-22801346)
chr4 (271-390)||(619813-619932)
chr4 (304-388)||(22047052-22047135)
chr4 (322-388)||(52942815-52942881)
chr4 (250-355)||(52942869-52942974)
chr4 (270-390)||(24878836-24878956)
chr4 (248-388)||(40091783-40091923)
chr4 (250-300)||(22048492-22048542)
chr4 (343-390)||(47274647-47274694)
chr4 (341-389)||(11434873-11434921)
chr4 (341-387)||(22801230-22801276)
chr4 (310-359)||(16689331-16689380)
chr4 (311-359)||(8529012-8529060)
[»] chr2 (18 HSPs)
chr2 (225-390)||(19502377-19502542)
chr2 (225-389)||(27104523-27104687)
chr2 (216-388)||(19504713-19504885)
chr2 (217-390)||(24162578-24162752)
chr2 (217-364)||(36559211-36559358)
chr2 (250-390)||(21521061-21521201)
chr2 (217-355)||(36561539-36561677)
chr2 (217-364)||(45332528-45332675)
chr2 (250-388)||(42064264-42064402)
chr2 (250-390)||(6259181-6259321)
chr2 (309-389)||(13910411-13910491)
chr2 (225-334)||(43623968-43624077)
chr2 (250-390)||(22407775-22407915)
chr2 (320-364)||(36561488-36561532)
chr2 (269-334)||(6264546-6264611)
chr2 (250-335)||(40032468-40032553)
chr2 (341-387)||(43623936-43623982)
chr2 (320-355)||(36561518-36561553)
[»] chr3 (38 HSPs)
chr3 (217-390)||(22114669-22114842)
chr3 (217-357)||(6063866-6064006)
chr3 (217-390)||(18099534-18099707)
chr3 (218-389)||(5191374-5191545)
chr3 (216-364)||(50493675-50493823)
chr3 (217-364)||(38210067-38210214)
chr3 (233-346)||(10192401-10192513)
chr3 (217-358)||(53896613-53896754)
chr3 (234-366)||(5899476-5899608)
chr3 (233-346)||(10085481-10085593)
chr3 (276-388)||(10956393-10956505)
chr3 (217-348)||(18097291-18097422)
chr3 (216-390)||(32264407-32264581)
chr3 (216-334)||(38889756-38889875)
chr3 (217-366)||(5885983-5886133)
chr3 (250-389)||(1321194-1321333)
chr3 (250-389)||(5522980-5523119)
chr3 (274-366)||(25388654-25388746)
chr3 (250-388)||(26720301-26720439)
chr3 (217-334)||(35777163-35777280)
chr3 (250-334)||(11162924-11163008)
chr3 (310-388)||(10958689-10958767)
chr3 (250-332)||(11170178-11170260)
chr3 (217-334)||(6719532-6719651)
chr3 (217-300)||(7606880-7606963)
chr3 (319-390)||(3859350-3859421)
chr3 (250-388)||(24177032-24177170)
chr3 (275-334)||(6066195-6066254)
chr3 (310-390)||(45882752-45882832)
chr3 (341-390)||(35777266-35777314)
chr3 (215-265)||(3859315-3859365)
chr3 (341-390)||(6719497-6719546)
chr3 (340-389)||(10084758-10084807)
chr3 (340-389)||(10191678-10191727)
chr3 (341-390)||(38889861-38889910)
chr3 (342-388)||(24979552-24979598)
chr3 (310-359)||(4308676-4308725)
chr3 (341-390)||(18162508-18162557)
[»] chr6 (19 HSPs)
chr6 (217-389)||(14507542-14507716)
chr6 (250-388)||(19227777-19227915)
chr6 (217-364)||(26068735-26068882)
chr6 (250-387)||(8995288-8995425)
chr6 (250-387)||(9019735-9019872)
chr6 (217-364)||(26066464-26066611)
chr6 (217-364)||(33308685-33308832)
chr6 (217-364)||(33310954-33311101)
chr6 (217-364)||(29755132-29755279)
chr6 (225-389)||(11983396-11983558)
chr6 (274-388)||(4816636-4816749)
chr6 (250-390)||(15530488-15530628)
chr6 (300-390)||(30729194-30729284)
chr6 (310-359)||(26084818-26084867)
chr6 (300-388)||(15533049-15533137)
chr6 (300-388)||(15541508-15541596)
chr6 (318-388)||(24192663-24192733)
chr6 (269-334)||(32279845-32279910)
chr6 (342-390)||(1072243-1072291)
[»] chr5 (39 HSPs)
chr5 (250-390)||(38881878-38882018)
chr5 (217-364)||(34477485-34477632)
chr5 (217-334)||(2174680-2174797)
chr5 (217-390)||(31544798-31544971)
chr5 (217-390)||(31542442-31542615)
chr5 (225-387)||(4236378-4236540)
chr5 (217-364)||(10749505-10749652)
chr5 (250-389)||(16775930-16776069)
chr5 (217-364)||(10756960-10757107)
chr5 (217-364)||(15354918-15355065)
chr5 (217-364)||(15357194-15357341)
chr5 (217-334)||(34479855-34479972)
chr5 (217-334)||(39797849-39797966)
chr5 (216-334)||(25921874-25921993)
chr5 (216-364)||(23664833-23664981)
chr5 (216-364)||(23793606-23793754)
chr5 (217-364)||(23667109-23667256)
chr5 (274-364)||(31179807-31179897)
chr5 (308-389)||(21684828-21684909)
chr5 (250-334)||(659746-659829)
chr5 (217-334)||(38960487-38960604)
chr5 (250-390)||(21947803-21947940)
chr5 (272-352)||(659850-659929)
chr5 (215-315)||(18186489-18186589)
chr5 (217-334)||(31466379-31466496)
chr5 (250-334)||(2818729-2818813)
chr5 (250-390)||(20507828-20507968)
chr5 (250-353)||(20504316-20504419)
chr5 (217-281)||(21684905-21684969)
chr5 (345-390)||(39797956-39798001)
chr5 (217-315)||(36402747-36402845)
chr5 (342-388)||(6756359-6756405)
chr5 (310-359)||(39854317-39854366)
chr5 (310-359)||(42238047-42238096)
chr5 (310-358)||(1240171-1240219)
chr5 (310-366)||(4409890-4409946)
chr5 (250-333)||(12556325-12556408)
chr5 (217-265)||(31179885-31179933)
chr5 (342-390)||(36402693-36402741)
[»] scaffold0127 (1 HSPs)
scaffold0127 (217-364)||(12907-13054)
[»] chr8 (16 HSPs)
chr8 (217-364)||(18812668-18812815)
chr8 (217-364)||(43079347-43079494)
chr8 (250-389)||(27826815-27826954)
chr8 (250-389)||(27829126-27829265)
chr8 (217-356)||(43081722-43081861)
chr8 (250-389)||(12517393-12517532)
chr8 (217-364)||(18810483-18810630)
chr8 (217-390)||(44720617-44720790)
chr8 (225-387)||(14807556-14807718)
chr8 (225-390)||(15067785-15067950)
chr8 (217-390)||(15072506-15072679)
chr8 (250-355)||(28251988-28252093)
chr8 (245-334)||(3886322-3886412)
chr8 (250-334)||(4423868-4423952)
chr8 (320-387)||(28251935-28252002)
chr8 (341-389)||(4423938-4423986)
[»] chr7 (20 HSPs)
chr7 (217-387)||(3878322-3878492)
chr7 (217-364)||(1047356-1047503)
chr7 (217-364)||(2935070-2935217)
chr7 (217-364)||(9027540-9027687)
chr7 (216-390)||(27306595-27306768)
chr7 (217-364)||(22136878-22137025)
chr7 (217-364)||(40551905-40552052)
chr7 (250-390)||(35412-35552)
chr7 (250-390)||(44347-44487)
chr7 (217-364)||(22107867-22108014)
chr7 (254-388)||(25542317-25542451)
chr7 (217-364)||(40549627-40549774)
chr7 (217-334)||(40837144-40837261)
chr7 (217-334)||(26804345-26804462)
chr7 (250-388)||(18567396-18567534)
chr7 (250-388)||(31435415-31435553)
chr7 (250-331)||(1049699-1049780)
chr7 (341-387)||(26804448-26804494)
chr7 (304-387)||(42006404-42006486)
chr7 (310-359)||(40946167-40946216)
[»] scaffold0250 (1 HSPs)
scaffold0250 (258-390)||(2670-2802)
[»] scaffold0140 (2 HSPs)
scaffold0140 (217-364)||(21915-22062)
scaffold0140 (217-364)||(24190-24337)
[»] scaffold0025 (2 HSPs)
scaffold0025 (225-387)||(69663-69825)
scaffold0025 (225-334)||(73427-73536)
[»] scaffold0472 (1 HSPs)
scaffold0472 (217-364)||(5927-6074)
[»] scaffold0068 (2 HSPs)
scaffold0068 (308-389)||(29001-29082)
scaffold0068 (217-281)||(28941-29005)
[»] scaffold0131 (1 HSPs)
scaffold0131 (218-390)||(14768-14941)
[»] scaffold0339 (1 HSPs)
scaffold0339 (343-390)||(3872-3919)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 50767536 - 50767747
Alignment:
Q  22 gataatgaaatatgaatgaatggaatgagatagatggtgcatttttaaattgtacagatgaaaacaaaagacaaatggaataaggacgaaatattcatga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50767536 gataatgaaatatgaatgaatggaatgagatagatggtgcatttttaaattgtacagatgaaaacaaaagacaaatggaataaggacgaaatattcatga 50767635  T
Q  122 aaaata-----------------tcacaagggataccgtcataacatgttacattagtagnnnnnnngtaaattcacaaacatctttctctaactatata 204  Q
    ||||||                 ||||||||||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||    
T  50767636 aaaatatctctctcaggacgccttcacaagggataccgtcataacatgttacattactagtttttttgtaaattcacaaacatctttctctaactatata 50767735  T
Q  205 aaagttaattaa 216  Q
    ||||||||||||    
T  50767736 aaagttaattaa 50767747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 20302198 - 20302372
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttt-tgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20302198 tgtgagagttaacttaaaatcagatttctgcagaatcgcggcatgatggcaaggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 20302297  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||||||||||    
T  20302298 aaaaattgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggcgaataacagaaacatatttttgg 20302372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 51752104 - 51752278
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttt-tgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51752104 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggttgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 51752203  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| || |||||||||||| |||||||||    
T  51752204 aaaaatcgtggcacgatggggccgcatcgtggcacgatggtgcgctggcggcgaataacataaacgtatttttgg 51752278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 13761577 - 13761750
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  13761577 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcatgatggaggtttcagtttttgaggcaaggcactgga 13761676  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||||||||| |||||||||||| | |||| || ||||||| |||| |||||||||    
T  13761677 aaaatcgtggcacgatggggtcgcatcgcggcacgatggtgtgctggcggcgaataacagaaacgtatttttgg 13761750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 51749778 - 51749952
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttt-tgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||  ||| |||| ||||||||||||||||   |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  51749778 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacgatggttgggcaacgtggtacgatggaggtttcagttttttgaggcaaggcactgg 51749877  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||| |||| |||||||||    
T  51749878 aaaaatcgtggcacgatggggtcgcatcgtggcacgatagtgcgctggcggcgaataacagaaacgtatttttgg 51749952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 245 - 390
Target Start/End: Original strand, 6823651 - 6823797
Alignment:
Q  245 tgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttt-tgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatc 343  Q
    |||| |||| |||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  6823651 tgcagaatcatggcacgatggttgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactggaaaaatcgtggcatgatggggtcgcatc 6823750  T
Q  344 gtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||| |||| || |||||||||||| |||||||||    
T  6823751 gtggcacgatggtgcgctggcggcgaataacataaacgtatttttgg 6823797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 10400369 - 10400196
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| |||  |||||||||||||| ||  |||||||||||||||| ||||||||||  ||| ||||||| |||||||    
T  10400369 tgtgagagttaacttaaaatcaggtttctgcggaatcgtggcacgattgctgggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactgg 10400271  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  10400270 aaatatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcaaataacataaacgtatttttgg 10400196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 28840451 - 28840590
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  28840451 aatcgtggcacgatggcaaggcaacgtggcacgattggaggtttcagttttt-aggcaaggtactggaaaaattgtggcacgatgggatcgcatcgtggc 28840549  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||| | ||||||| || |||| |||||||||||||    
T  28840550 acgatggtgtgctggcagcgaaaaacagaaacatatttttg 28840590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 225 - 364
Target Start/End: Original strand, 16225895 - 16226034
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgt 324  Q
    ||||||| ||||||| ||| |||| ||||||||||||| ||   |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  16225895 ttaacttaaaatcaggtttctgcagaatcgtggcacgacggttgggcaacgtggcacgatggaggttttagttttttgggcaaggcactggaaaaatcgt 16225994  T
Q  325 ggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  16225995 ggcacgatggggtcgcatcgtggcacgatggtgcgctggc 16226034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 15823319 - 15823460
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||  ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  15823319 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactagaaaaatcgtggcacgatggggtcgcatcgtggc 15823417  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgga 391  Q
    ||||||||||| | ||||||||||||| |||||||||||||||    
T  15823418 acgatggtgcgctagcagcaaataacagaaacatatttttgga 15823460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 217 - 359
Target Start/End: Original strand, 47179428 - 47179570
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| |||||||  |||||||||||| |    
T  47179428 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgaa 47179527  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  47179528 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcg 47179570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 28842266 - 28842405
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||    
T  28842266 aatcgtggcacgatggcaaggctacgtggcacgattggaggtttcagttttt-aggcaaggtactggaaaaatcgtggcacgatgggatcgcatcgtggc 28842364  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||   ||||||| || |||| |||||||||||||    
T  28842365 acgatggtgtcctggcagcgaaaaacagaaacatatttttg 28842405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 47177078 - 47177224
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| | |  |||||||||||||||||||||||| |||||||| |||||| |||||||    
T  47177078 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacgactgggcaacgtggcacgatggaggttttagtttttg-ggcaagacactgga 47177176  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  47177177 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 47177224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 6822775 - 6822893
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcag-tttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6822775 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 6822874  T
Q  316 aaaaatcgtggcacgatgg 334  Q
    |||||||||||||||||||    
T  6822875 aaaaatcgtggcacgatgg 6822893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 23783238 - 23783376
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  23783238 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 23783337  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatgg 355  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23783338 aaaatcgtggcacgatggggtcgcatcgtggcacgatgg 23783376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 20291279 - 20291386
Alignment:
Q  216 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcag-tttttgaggcaaggcactg 314  Q
    |||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  20291279 atgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatggcaaggcaacgtggcacggtggaggtttcagttttttgaggcatggcactg 20291378  T
Q  315 gaaaaatc 322  Q
    ||||||||    
T  20291379 gaaaaatc 20291386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 13214854 - 13214994
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    ||||||||||||||||   |||||||||||||||| ||||||||||||||| |||||||| |||||||    |||||||| |||||| | ||| ||||||    
T  13214854 aatcgtggcacgatggttgggcaacgtggcacgattggaggtttcagtttt-gaggcaagtcactggatttttcgtggcatgatgggattgcaacgtggc 13214952  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||| | ||||||||||||||| |||| |||||||||    
T  13214953 acgatggtgtgttggcagcaaataacaaaaacgtatttttgg 13214994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 16231369 - 16231458
Alignment:
Q  245 tgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||||| |||||||  |||||| |||||||||||||||||||||||||    
T  16231369 tgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaagacactggaaaaatcgtggcacgatgg 16231458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 250 - 387
Target Start/End: Complemental strand, 3580126 - 3579989
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||| ||| ||||||||| ||| || ||| ||||||||| | |||||||| || |||||||||||||| ||| |||| | ||| ||||||    
T  3580126 aatcgtggcacgattgcagggcaacgtgacacaattggatgtttcagttat-gaggcaagtcattggaaaaatcgtggtacggtgggattgcaacgtggc 3580028  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    ||||||||||| |||| || |||| ||||||| ||||||    
T  3580027 acgatggtgcgctggcggcgaatatcataaacgtatttt 3579989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 391
Target Start/End: Original strand, 41646717 - 41646834
Alignment:
Q  274 cgtggcacgatg-gaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaata 372  Q
    |||||||||||  |||||||||||||| |||||||| |||||||    |||||||||| |||| | ||| ||||||||||||||||  ||||||| ||||    
T  41646717 cgtggcacgattagaggtttcagtttt-gaggcaagtcactggatttttcgtggcacggtgggattgcaacgtggcacgatggtgcactggcagcgaata 41646815  T
Q  373 acataaacatatttttgga 391  Q
    ||| |||||||||||||||    
T  41646816 acagaaacatatttttgga 41646834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 23783362 - 23783406
Alignment:
Q  320 atcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  23783362 atcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 23783406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 47451405 - 47451488
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgca-taatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttt 299  Q
    ||||||| ||||||||||||||||||| ||||  |||||||||||||||||  ||||| ||||||||| ||||||||||||||||    
T  47451405 tgtgagagttaacttcaaatcagattt-tgcagaaatcgtggcacgatggctgggcaatgtggcacgattggaggtttcagtttt 47451488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 388
Target Start/End: Complemental strand, 30790882 - 30790764
Alignment:
Q  270 gcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagca 368  Q
    |||| |||||||||| ||| ||||||||| | || ||||| ||||||||||| |||||||||||||| |||||  |||||||||||||||| |||  |      
T  30790882 gcaatgtggcacgattggatgtttcagttat-gaagcaagtcactggaaaaaacgtggcacgatgggatcgcaatgtggcacgatggtgcgctggagggg 30790784  T
Q  369 aataacataaacatattttt 388  Q
    || ||||||||| |||||||    
T  30790783 aaaaacataaacgtattttt 30790764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 28207500 - 28207434
Alignment:
Q  324 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||| || ||||||||||||||||| |||| || |||||||||||| | |||||||    
T  28207500 tggcacgatggggtcacaacgtggcacgatggtgcgctggcggcgaataacataaacgtttttttgg 28207434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 388
Target Start/End: Original strand, 39462310 - 39462429
Alignment:
Q  269 ggcaacgtggcacgatg-gaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagc 367  Q
    ||||||||||||||||  |||||||||||||| |||||||| || ||||    ||||||||||||||| | |||  |||||||||||||||| | ||||     
T  39462310 ggcaacgtggcacgattagaggtttcagtttt-gaggcaagtcagtggatttttcgtggcacgatgggattgcaatgtggcacgatggtgcgcttgcagt 39462408  T
Q  368 aaataacataaacatattttt 388  Q
     ||||||| |||| |||||||    
T  39462409 gaataacagaaacgtattttt 39462429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 49687334 - 49687418
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    |||||||||| ||||||  ||||||||||||| | |||||||||||| |||||||||||| |||||||    ||||||||||||||    
T  49687334 aatcgtggcatgatggctgggcaacgtggcacaattggaggtttcag-ttttgaggcaagtcactggatttttcgtggcacgatgg 49687418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 14098385 - 14098337
Alignment:
Q  342 tcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||| ||||||||||||| ||||||| |||||||||||| |||||||||    
T  14098385 tcgttgcacgatggtgcgctggcagcgaataacataaacgtatttttgg 14098337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 49687405 - 49687453
Alignment:
Q  342 tcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||| || |||| |||||||||||| |||||||||    
T  49687405 tcgtggcacgatggtgcgctgacagcgaataacataaacgtatttttgg 49687453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 47451508 - 47451559
Alignment:
Q  337 tcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||||||||||||||||| || |||| ||||||| |||| |||||||    
T  47451508 tcgcatcgtggcacgatggtgcgctgacagcgaataacagaaacgtattttt 47451559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 38925965 - 38925915
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttt 299  Q
    |||||||| ||||||||  ||||||||||||||| ||||||||||||||||    
T  38925965 aatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagtttt 38925915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 13449996 - 13449947
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    |||||||||||||||| |||||| || ||| |||||| ||||||||||||    
T  13449996 cactggaaaaatcgtgccacgattggatcgaatcgtgccacgatggtgcg 13449947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 219 - 388
Target Start/End: Original strand, 51015042 - 51015211
Alignment:
Q  219 tgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaa 318  Q
    ||||| ||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51015042 tgagagttaacttaaaatcagatttctgcagaatcgtggcatgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcactggaaa 51015141  T
Q  319 aatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  51015142 aattgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaataacagaaacatattttt 51015211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 11006781 - 11006607
Alignment:
Q  217 tgtgagatttaacttcaaatcagattt-atgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| ||||| |||||||||||||| ||  |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  11006781 tgtgagagttaacttaaaatcaggttttatgcagaatcgtggcacgatcgctgggcaacgtggcacgatggaggtttcaattttttaggcaaggcactgg 11006682  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  11006681 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcaaaaaacagaaacatatttttgg 11006607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 9177035 - 9176862
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| ||  ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  9177035 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggttaggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 9176936  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||  || |||| ||||||||||||||    
T  9176935 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcagggaaaaacagaaacatatttttgg 9176862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 225 - 388
Target Start/End: Complemental strand, 37089906 - 37089742
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatg-gaggtttcagtttttgaggcaaggcactggaaaaatcg 323  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||| ||||||| |||  |||||||||||||||||    
T  37089906 ttaacttaaaatcagatttctgcagaatcgtggcacgatggcaaggcaacgtggcacgatgagatgttttagttttttaggtgaggcactggaaaaatcg 37089807  T
Q  324 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    |||||||||||||||||||||||||||||||||||| |||| || ||||||| |||| |||||||    
T  37089806 tggcacgatggggtcgcatcgtggcacgatggtgcgctggcggcgaataacagaaacgtattttt 37089742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 16932360 - 16932213
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  16932360 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 16932261  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  16932260 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 16932213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 9174684 - 9174512
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||  |||| ||||||||||||| ||| ||||||||| ||||||||||||||| ||||| | |||||||||||||||    
T  9174684 tgtgagagttaacttaaaatcaggttc-tgcagaatcgtggcacgacggctaggcaacgtagcacgatggaggttttagtttattaggcaaggcactgga 9174586  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||||||  || |||| ||||||||||||||    
T  9174585 aaaatcatggcacgatggggtctcatcgtggcacgatggtgcgctggcagggaaaaacagaaacatatttttgg 9174512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 24888598 - 24888762
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcg 323  Q
    ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||||||||  ||| ||||||| |||||||||||||||    
T  24888598 ttaacttaaaatcagatttctgcagaattgtggcacgatggctaggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcg 24888696  T
Q  324 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||||| ||||||||||||||||||||| | ||||||| || |||| |||||||||||||    
T  24888697 tggcacgatgggatcgcatcgtggcacgatggtgtgctggcagcgaaaaacagaaacatatttttg 24888762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 36920125 - 36919953
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||  |||| |||||||||||||||||  |||||||||||||||| |||||||||| |||| |||||||| ||||||    
T  36920125 tgtgagagttaacttaaaatcaggttc-tgcaaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaatttt-gaggcaagtcactgg 36920028  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  | |||| |||||||||    
T  36920027 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaatagtagaaacgtatttttgg 36919953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 214 - 391
Target Start/End: Complemental strand, 36922036 - 36921860
Alignment:
Q  214 taatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcac 312  Q
    |||||||||| ||||||| ||||||| ||  |||| |||||||| ||||||||  |||||| ||||||||| ||||||||||||||| |||||||| |||    
T  36922036 taatgtgagagttaacttaaaatcaggttc-tgcaaaatcgtggtacgatggctgggcaacatggcacgattggaggtttcagtttt-gaggcaagtcac 36921939  T
Q  313 tggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgga 391  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  ||||||| ||||||| |||| ||||||||||    
T  36921938 tggaaaaatcgtggcacgatggggtcgcattgtggcacgatggtgcattggcagcgaataacagaaacgtatttttgga 36921860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 215 - 364
Target Start/End: Complemental strand, 22783319 - 22783170
Alignment:
Q  215 aatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactg 314  Q
    ||||||||| ||||||| ||||||| ||| |||| |||||||| ||||| ||  |||||||||||||||||||||||| |||||||  ||||||||||||    
T  22783319 aatgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactg 22783220  T
Q  315 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  22783219 gaaaaatcatggcacgatggggtctcatcgtggcacgatggtgcgctggc 22783170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 219 - 387
Target Start/End: Complemental strand, 22803270 - 22803102
Alignment:
Q  219 tgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaa 317  Q
    ||||| ||||||| |||||| |||| |  | |||||||| ||||||||  |||||||||||||||| ||||||||||||||| |||| ||||||||||||    
T  22803270 tgagagttaacttaaaatcaaatttctatagaatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagtttt-gaggaaaggcactggaa 22803172  T
Q  318 aaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||    
T  22803171 aaatcgtggctcgatggggtcgcatcgtggcacgatggtgcgctggcagcgaataacaaaaacgtatttt 22803102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 217 - 389
Target Start/End: Original strand, 38408993 - 38409165
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| |||| |||||| |||| |||||||||||||| ||  |||| ||||||||||| ||||||||||  ||| ||||||| |||||||    
T  38408993 tgtgagagttaacttaaaattagatttctgcagaatcgtggcacgattgctgggcatcgtggcacgattggaggtttcaagttt-gaggcaaagcactgg 38409091  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| || || |||| |||||||||||||    
T  38409092 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgttggcggcgaaaaacagaaacatatttttg 38409165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 215 - 359
Target Start/End: Complemental strand, 16934716 - 16934572
Alignment:
Q  215 aatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactg 314  Q
    ||||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||| ||||||||||||||||| |||||||  ||||||||||||    
T  16934716 aatgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacatggcacgatggaggttttagttttttgggcaaggcactg 16934617  T
Q  315 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  16934616 gaaaaatcgtggcacgatggggtctcatcctggcacgatggtgcg 16934572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 3825112 - 3824939
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||| |||||||||  |||||| ||||||||| ||||||||||||||| ||||||| |||||||    
T  3825112 tgtgagagttaacttaaaatcaggtttctgcagaatcgtgacacgatggctgggcaacatggcacgattggaggtttcagtttt-gaggcaaagcactgg 3825014  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| ||||  | ||||||| |||| |||||||||    
T  3825013 aaaaatcatggcacaatggggtcgcatcgtggcacgatggtgcgttggcgacgaataacagaaacgtatttttgg 3824939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 217 - 387
Target Start/End: Complemental strand, 5638006 - 5637837
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||  |||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5638006 tgtgagagttaacttaaaatcaggtttctgcggaatcgtggcacgattgctgggcaacgtggcacgatggaggtttcagtttt-gaggcaaggcactgga 5637908  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    |||||| || ||||||||| ||||||||||||| ||||||| | ||||||| || |||| |||| ||||||    
T  5637907 aaaatcatgtcacgatgggatcgcatcgtggcatgatggtgagctggcagcgaaaaacagaaacgtatttt 5637837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 22044897 - 22044757
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttt--gaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtgg 347  Q
    |||||||||||||| | | |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||| |||||||||||    
T  22044897 aatcgtggcacgattgaagggcaacgtggcacgatggaggtttcattttttttgaggcaaggcactggaaaaatcgtggcacgatgggatcgcatcgtgg 22044798  T
Q  348 cacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    |||||||||| | ||||||  || |||| ||||||||||||    
T  22044797 cacgatggtgtgctggcagggaaaaacagaaacatattttt 22044757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 254 - 389
Target Start/End: Complemental strand, 31850101 - 31849966
Alignment:
Q  254 gtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacga 352  Q
    |||||||||| ||  |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31850101 gtggcacgattgctgggcaacgtggcacgattggaggtttcagttttgg-ggcaaggcactggaaaaatcttggcacgatggggtcgcatcgtggcacga 31850003  T
Q  353 tggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||| ||||||| || |||| |||||||||||||    
T  31850002 tggtgcgctggcagcgaaaaacagaaacatatttttg 31849966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 22780952 - 22780805
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||| ||||| ||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  22780952 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 22780853  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||| ||||||||||||||| ||| |||||||||||||||| ||||    
T  22780852 aaaatcatggcacgatggggtctcattgtggcacgatggtgcgctggc 22780805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 274 - 390
Target Start/End: Complemental strand, 11009075 - 11008958
Alignment:
Q  274 cgtggcacgatggaggtttcagtttttg-aggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaata 372  Q
    |||||||| |||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |    
T  11009075 cgtggcacaatggaggtttcaatttttttaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcactggcagcaaaaa 11008976  T
Q  373 acataaacatatttttgg 390  Q
    ||| ||||||||||||||    
T  11008975 acagaaacatatttttgg 11008958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 7941133 - 7941251
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcag-tttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7941133 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 7941232  T
Q  316 aaaaatcgtggcacgatgg 334  Q
    |||||| ||||||||||||    
T  7941233 aaaaatggtggcacgatgg 7941251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 11434769 - 11434887
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcag-tttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||| ||||||||  ||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  11434769 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggtacgatggctgggcaacgtggcacgatggaggtttcagttttttgaggcaagacactgg 11434868  T
Q  316 aaaaatcgtggcacgatgg 334  Q
    |||||||||||||||||||    
T  11434869 aaaaatcgtggcacgatgg 11434887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 18846923 - 18847098
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttat--gcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcact 313  Q
    ||||||| ||||||| ||||||||||| |  ||| |||||||||||||| |   || | ||||||||||| ||||||||||||||| ||||||||| |||    
T  18846923 tgtgagagttaacttaaaatcagatttttctgcagaatcgtggcacgattgttgggaatcgtggcacgattggaggtttcagtttt-gaggcaaggtact 18847021  T
Q  314 ggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| | || |  || |||| ||||||||||||||    
T  18847022 ggaaaaatcgtggtacgatggggtcgcatcgtggcacgatggtgcgctcgcggggaaaaacagaaacatatttttgg 18847098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 389
Target Start/End: Original strand, 5198266 - 5198386
Alignment:
Q  269 ggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagc 367  Q
    |||||||||||||||| |||| |||||  ||| ||||||| || |||||||||||||||||||||||| || |||||||||||||||||||| |||||||    
T  5198266 ggcaacgtggcacgattggagatttcaagttt-gaggcaaagctctggaaaaatcgtggcacgatgggatcacatcgtggcacgatggtgcgctggcagc 5198364  T
Q  368 aaataacataaacatatttttg 389  Q
     || |||| |||||||||||||    
T  5198365 gaaaaacagaaacatatttttg 5198386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 48486146 - 48486286
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||   ||||||||||||||| ||||||||||||||| |||||||| |||||||    |||||||||||||||||| ||  |||||    
T  48486146 aatcgtggcacgatggctgagcaacgtggcacgattggaggtttcagtttt-gaggcaagtcactggatttttcgtggcacgatggggtcacaatgtggc 48486244  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    || |||||||| ||||||| ||||||| |||| |||||||||    
T  48486245 acaatggtgcgctggcagcgaataacagaaacgtatttttgg 48486286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 9148087 - 9148192
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||| ||||| ||  ||||||||||| |||| ||||||||||  ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  9148087 aatcgtggtacgattgctgggcaacgtggcgcgattggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatggggttgcatcgtggc 9148185  T
Q  349 acgatgg 355  Q
    |||||||    
T  9148186 acgatgg 9148192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 24880299 - 24880419
Alignment:
Q  271 caacgtggcacga-tggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaa 369  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||    ||| ||||||||||| | ||| ||||||||||||||||| ||||||| |    
T  24880299 caacgtggcacgaatggaggtttcagtttt-gaggcaagtcactggatttttcgcggcacgatgggattgcaacgtggcacgatggtgcgctggcagcga 24880397  T
Q  370 ataacataaacatatttttgga 391  Q
    |||||| |||| ||||||||||    
T  24880398 ataacagaaacgtatttttgga 24880419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 22801346 - 22801262
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    ||||||||||||||||   ||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  22801346 aatcgtggcacgatggttgggcaacgtgacacgattggaggtttcagtttt-gaggcaaggaactggaaaaatcgtggcacgatgg 22801262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 390
Target Start/End: Complemental strand, 619932 - 619813
Alignment:
Q  271 caacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaa 369  Q
    ||||||||||| || ||| ||||||||||| |||||||| || ||||    ||||||||||||||||||||| |||||||| |||||||| |||| || |    
T  619932 caacgtggcacaattggatgtttcagtttt-gaggcaagtcattggatttttcgtggcacgatggggtcgcaacgtggcacaatggtgcgctggcggcga 619834  T
Q  370 ataacataaacatatttttgg 390  Q
    |||||| ||||||||||||||    
T  619833 ataacagaaacatatttttgg 619813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 22047135 - 22047052
Alignment:
Q  304 gcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||  || |||| ||||||||||||    
T  22047135 gcaaggcactggaaaaatc-tggcacgatgggatcgcatcgtggcacgatggtgtgctggcagggaaaaacagaaacatattttt 22047052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 52942881 - 52942815
Alignment:
Q  322 cgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||||||||||| || |||||||||||| |||| ||||||| ||||||||||||||||||||    
T  52942881 cgtggcacgatggggtcacaacgtggcacgatgatgcgctggcagcgaataacataaacatattttt 52942815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 52942974 - 52942869
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    ||||||||||||||||   |||||||||||||||| ||||||||||| ||| |||||||| ||||| | |  |||||||||||||||||| || ||||||    
T  52942974 aatcgtggcacgatggttgggcaacgtggcacgattggaggtttcagcttt-gaggcaagtcactgaatatttcgtggcacgatggggtcacaacgtggc 52942876  T
Q  349 acgatgg 355  Q
    |||||||    
T  52942875 acgatgg 52942869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 390
Target Start/End: Original strand, 24878836 - 24878956
Alignment:
Q  270 gcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagca 368  Q
    ||||||||||||||| ||||||||||||||| || ||||| |||||||    ||||||||||||||| | ||| |||||||||||||| || ||||| |     
T  24878836 gcaacgtggcacgattggaggtttcagtttt-gacgcaagtcactggatttttcgtggcacgatgggattgcaacgtggcacgatggtacgctggcatcg 24878934  T
Q  369 aataacataaacatatttttgg 390  Q
    ||||||| |||| |||||||||    
T  24878935 aataacagaaacgtatttttgg 24878956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 388
Target Start/End: Complemental strand, 40091923 - 40091783
Alignment:
Q  248 ataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtg 346  Q
    |||||||||||||| |||   || ||||||||||||| |||| |||||||||| || | ||| || ||||||||||||| || |||||||||||| ||||    
T  40091923 ataatcgtggcacggtggttgggtaacgtggcacgattggagatttcagtttt-gaagtaagccattggaaaaatcgtgccatgatggggtcgcaacgtg 40091825  T
Q  347 gcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
     |||||||||||  || |||| |||||| ||||| |||||||    
T  40091824 acacgatggtgcactgacagcgaataacgtaaacgtattttt 40091783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 22048542 - 22048492
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttt 300  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  22048542 aatcgtggcacgattgaagggcaacgtggcacgatggaggtttcagttttt 22048492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 47274647 - 47274694
Alignment:
Q  343 cgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||    
T  47274647 cgtggcacgatggtgcgatggcagcgaataacataaacgtatttttgg 47274694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 11434873 - 11434921
Alignment:
Q  341 atcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||||||||||||| ||||||| || |||| |||||||||||||    
T  11434873 atcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatttttg 11434921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 22801276 - 22801230
Alignment:
Q  341 atcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    |||||||||||||||||||  |||||||||||||| |||| ||||||    
T  22801276 atcgtggcacgatggtgcgccggcagcaaataacagaaacgtatttt 22801230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 16689380 - 16689331
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    |||||||||||||||| |||||||   ||||| |||||||||||||||||    
T  16689380 cactggaaaaatcgtgccacgatgaaatcgcaacgtggcacgatggtgcg 16689331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 8529012 - 8529060
Alignment:
Q  311 actggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    ||||||||||||||| |||||||  | ||||||||| ||||||||||||    
T  8529012 actggaaaaatcgtgccacgatgaagccgcatcgtgccacgatggtgcg 8529060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 225 - 390
Target Start/End: Complemental strand, 19502542 - 19502377
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgt 324  Q
    ||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19502542 ttaacttaaaatcaggtttctgcagaatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcactggaaaaatcgt 19502443  T
Q  325 ggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||||||||||||||||||||||| ||||  | ||||||| ||||||||||||||    
T  19502442 ggcacgatggggtcgcatcgtggcacgatggtgcgctggcgacgaataacagaaacatatttttgg 19502377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 27104523 - 27104687
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgt 324  Q
    ||||||| ||||||||||| |||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27104523 ttaacttaaaatcagatttctgcagaatcgtggcacgattgaagggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgt 27104622  T
Q  325 ggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||||| ||||||||||||||||||||||| ||||||  || ||||||||||||||||||    
T  27104623 ggcacgatgggatcgcatcgtggcacgatggtgcgctggcagggaaaaacataaacatatttttg 27104687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 216 - 388
Target Start/End: Complemental strand, 19504885 - 19504713
Alignment:
Q  216 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgg 315  Q
    |||||| | ||||||| ||||||| |||  ||| |||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  19504885 atgtgaaagttaacttaaaatcaggtttcagcagaatcatggcacgatggcaaggcaacgtggcacgatggaggttttaattttttaggcaaggcactgg 19504786  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||  | ||||||| ||||| ||||||    
T  19504785 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcgacgaataacagaaacacattttt 19504713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 24162752 - 24162578
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttt-gaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||  ||| |||| ||||||||||| ||||   |||||||||||||||||||||||||||||||| |||||||||||||||    
T  24162752 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacaatggttgggcaacgtggcacgatggaggtttcagttttttgaggcaaggcactgg 24162653  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||  | |||| |||||||||    
T  24162652 aaaaatcgtggcacgatggggtcgcatcgtggcacgattgtgcgctggctgcgaatattagaaacgtatttttgg 24162578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 36559358 - 36559211
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  36559358 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 36559259  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36559258 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 36559211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 21521201 - 21521061
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||| || ||||| |||||||||||||||| ||||||||| ||||| ||||||    
T  21521201 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttt-gaagcaagccactggaaaaatcgtgccacgatgggatcgcaacgtggc 21521103  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||| ||||||| |||||||||||| |||||||||    
T  21521102 acgatggtgcgctggcagcgaataacataaacgtatttttgg 21521061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 36561677 - 36561539
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  |  |||||||||||||||| |||||||  ||||||||||||||    
T  36561677 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcacggcacgatggaggttttagttttttgggcaaggcactgga 36561578  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatgg 355  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36561577 aaaatcgtggcacgatggggtcgcatcgtggcacgatgg 36561539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 45332675 - 45332528
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| |||||||  ||||||| ||||||    
T  45332675 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggaactgga 45332576  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  45332575 aaaatcgtggaacgatggggtcacatcgtggcacgatggtgcgctggc 45332528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 42064264 - 42064402
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||| ||  |||||||||| |||| |||||||||||  ||| ||||||| ||||||||||||||||||||||||||| || |||||||||    
T  42064264 aatcgtggcacgattgctgggcaacgtggtacgactggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatgggatcacatcgtggc 42064362  T
Q  349 acgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||||| ||||||| || |||| ||||||||||||    
T  42064363 acgatggtgcgctggcagcgaaaaacagaaacatattttt 42064402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 6259321 - 6259181
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||   |||||||||||| || ||| ||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| |||| |    
T  6259321 aatcgtggcacgatggctgtgcaacgtggcactattggatgtttcagtttt-gaggaaagtcactggaaaaatcgtggcacgatgggatcgcaacgtgac 6259223  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||| |||| |  ||||||| ||||||||||||||    
T  6259222 acgatggtgcgctggcggtgaataacagaaacatatttttgg 6259181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 13910491 - 13910411
Alignment:
Q  309 gcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||| |||||||||||||    
T  13910491 gcactggaaaaatcgtggcacgatggggtcgcattgtggcacgatggtgcgctggcagcgaaaaacagaaacatatttttg 13910411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 43624077 - 43623968
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcg 323  Q
    ||||||| ||||||| ||| |||| |||| ||||||||||||  |||||| ||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  43624077 ttaacttaaaatcaggtttctgcagaatcatggcacgatggctgggcaacatggcacgattggaggtttcagtttt-gaggcaaggcactgaaaaaatcg 43623979  T
Q  324 tggcacgatgg 334  Q
    |||||||||||    
T  43623978 tggcacgatgg 43623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 22407915 - 22407775
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||| | | || ||| ||||||||| ||| ||||||||||| |||||||| || || |||||| ||||||||||||| || || ||||||    
T  22407915 aatcgtggcacgattgaagggtaacatggcacgattggatgtttcagtttt-gaggcaagtcagtgaaaaaattgtggcacgatgggatcacaacgtggc 22407817  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||| ||||||| ||||||| |||| |||||||||    
T  22407816 acgatggtgcgttggcagcgaataacagaaacgtatttttgg 22407775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 36561532 - 36561488
Alignment:
Q  320 atcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  36561532 atcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 36561488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 6264611 - 6264546
Alignment:
Q  269 ggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    |||||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||    
T  6264611 ggcaacgtggcatgattggatgtttcagtttt-gaggcaagtcactggaaaaatcgtggcacgatgg 6264546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 40032553 - 40032468
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggg 335  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||| ||||||| |||| |||||||    |||||||||||||||    
T  40032553 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcag-ttttgagacaagtcactggatttttcgtggcacgatggg 40032468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 43623982 - 43623936
Alignment:
Q  341 atcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  43623982 atcgtggcacgatggtgcgctggcagcaaataacataaacgtatttt 43623936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 36561553 - 36561518
Alignment:
Q  320 atcgtggcacgatggggtcgcatcgtggcacgatgg 355  Q
    ||||||||||||||||||||||||||||||||||||    
T  36561553 atcgtggcacgatggggtcgcatcgtggcacgatgg 36561518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 22114842 - 22114669
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| || | ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22114842 tgtgagagttaacttaaaatcaggtttctgtagaatcgtggcacgatggttgggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 22114743  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||| |||| |||||||||    
T  22114742 aaaattgtggcacgatggggtcgcatcgtggcacgatggtgcgatggcggcgaataacagaaacgtatttttgg 22114669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 217 - 357
Target Start/End: Complemental strand, 6064006 - 6063866
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||  |||||||||||| |    
T  6064006 tgtgagaattaacttaaaatcaggtttatgcagaatcgtggcacgatggcaaggcaacgtggcacaatggaggttttagttttttgggcaaggcactgaa 6063907  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtg 357  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6063906 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtg 6063866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 18099707 - 18099534
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  18099707 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttt-gaggcaagacactgg 18099609  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| || || || | |||| |||||||||    
T  18099608 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcggcgaacaatagaaacgtatttttgg 18099534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 218 - 389
Target Start/End: Original strand, 5191374 - 5191545
Alignment:
Q  218 gtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactgga 316  Q
    |||||| ||||||| ||||||||||| |||| |||||||||||||| ||  |||| ||||||||||| ||||||||||||||| ||||||||| ||||||    
T  5191374 gtgagagttaacttaaaatcagatttctgcagaatcgtggcacgattgctgggcatcgtggcacgattggaggtttcagtttt-gaggcaaggtactgga 5191472  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||| || |||| |||||||||||||    
T  5191473 aaaatcgtggcacgatgggatctcatcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatttttg 5191545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 216 - 364
Target Start/End: Original strand, 50493675 - 50493823
Alignment:
Q  216 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgg 315  Q
    |||||||| ||||||| ||||||| ||| |||| |||||||||||||| ||  |||||||||||||||||||||||| |||||||  |||||||||||||    
T  50493675 atgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgg 50493774  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  50493775 aaaaatcgtggcacgatggagtctcatcgtggcacgatggtgcgctggc 50493823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 38210067 - 38210214
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  38210067 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 38210166  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  38210167 aaaatcgtggcacgatggggtctcatcgtggcacgatagtgcgctggc 38210214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 10192513 - 10192401
Alignment:
Q  233 aaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgat 332  Q
    |||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10192513 aaatcagatttatgcggaatcgtggcacgatcgcaaggcaacgtggcacgatggaggtttcag-ttttgaggcaaggcactggaaaaatcgtggcacgat 10192415  T
Q  333 ggggtcgcatcgtg 346  Q
    ||| ||||||||||    
T  10192414 gggatcgcatcgtg 10192401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 217 - 358
Target Start/End: Complemental strand, 53896754 - 53896613
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||| ||  |||||||||||||||||||||||| |||||||  ||||||| ||||||    
T  53896754 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgattgctgggcaacgtggcacgatggaggttttagttttttgggcaaggtactgga 53896655  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgc 358  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  53896654 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgc 53896613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 234 - 366
Target Start/End: Original strand, 5899476 - 5899608
Alignment:
Q  234 aatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatg 333  Q
    |||||| ||| ||||||||| ||||||||| | | ||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||    
T  5899476 aatcaggtttctgcataatcatggcacgattgaagggcaacgtggcacgatggatgttttagttttttaggcaaggcactggaaaaatcatggcacgatg 5899575  T
Q  334 gggtcgcatcgtggcacgatggtgcggtggcag 366  Q
    |||||||||||||||||||||||||| ||||||    
T  5899576 gggtcgcatcgtggcacgatggtgcgctggcag 5899608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 10085593 - 10085481
Alignment:
Q  233 aaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgat 332  Q
    |||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10085593 aaatcagatttatgcggaatcgtggcatgatcgcaaggcaacgtggcacgatggaggtttcag-ttttgaggcaaggcactggaaaaatcgtggcacgat 10085495  T
Q  333 ggggtcgcatcgtg 346  Q
    ||| || |||||||    
T  10085494 gggatcacatcgtg 10085481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 276 - 388
Target Start/End: Complemental strand, 10956505 - 10956393
Alignment:
Q  276 tggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataac 374  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  10956505 tggcacgattggaggtttcagttttgg-ggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaataac 10956407  T
Q  375 ataaacatattttt 388  Q
    |||||| |||||||    
T  10956406 ataaacgtattttt 10956393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 217 - 348
Target Start/End: Complemental strand, 18097422 - 18097291
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||||  ||    
T  18097422 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttt-gaggcaaggcatagg 18097324  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    ||||||||||||||||||||||||||| |||||    
T  18097323 aaaaatcgtggcacgatggggtcgcatagtggc 18097291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 216 - 390
Target Start/End: Complemental strand, 32264581 - 32264407
Alignment:
Q  216 atgtgagatttaacttcaaatcagatttatgcataa-tcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcact 313  Q
    |||||||| ||||||| ||||||| ||| |||| || |||||||||||||||  || ||||||||||||| |||||||||||||||||||||||| ||||    
T  32264581 atgtgagagttaacttaaaatcaggttt-tgcagaaatcgtggcacgatggctggg-aacgtggcacgattggaggtttcagtttttgaggcaagtcact 32264484  T
Q  314 ggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||    ||||||||||||||| | ||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  32264483 ggatttttcgtggcacgatgggcttgcaacgtggcacgatggtgcgctggcagcgaataacagaaacatatttttgg 32264407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 38889756 - 38889875
Alignment:
Q  216 atgtgagatttaacttcaaatcagattta-tgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactg 314  Q
    |||||||| ||||||| |||| || |||  |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  38889756 atgtgagagttaacttaaaattaggttttctgcagaatcgtggtacgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcattg 38889855  T
Q  315 gaaaaatcgtggcacgatgg 334  Q
    ||||||||||||||||||||    
T  38889856 gaaaaatcgtggcacgatgg 38889875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 366
Target Start/End: Original strand, 5885983 - 5886133
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaa-cgtggcacgatggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| |||| || ||| | || |||||||||||||| | |  |||| |||||||||||||| |||| ||||||| |||||||| |||||    
T  5885983 tgtgagagttaacttaaaattaggtttttacagaatcgtggcacgattgaagcgcaaacgtggcacgatggatgttttagttttttaggcaaggtactgg 5886082  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcag 366  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  5886083 aaaaatcgtggcacgatggggtcgcatcgtggtacgatggtgcgctggcag 5886133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 1321194 - 1321333
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgatg-gaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||  ||| ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  1321194 aatcgtggcacgattgctgggcaacgtggcacgattagaggtttcaagttt-gaggcaaagcactgaaaaaatcgtggcacgatggggtcgcatcgtggc 1321292  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||| | ||||||| || |||| |||||||||||||    
T  1321293 acgatggtgtgctggcagcgaaaaacagaaacatatttttg 1321333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 250 - 389
Target Start/End: Complemental strand, 5523119 - 5522980
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||| ||| ||  |||||| ||||||||| || |||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  5523119 aatcgtggcaagattgctgggcaacatggcacgattggtggtttcagtttt-gaggcaaggtactggaaaaatcgtggcacaatgggatcgcatcgtggc 5523021  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||||| ||||||| || |||| |||||||||||||    
T  5523020 acgatggtgcgctggcagcgaaaaacagaaacatatttttg 5522980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 25388654 - 25388746
Alignment:
Q  274 cgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcag 366  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  25388654 cgtggcacgatggaggttttagttttttgggcaaggcactggaaaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggcag 25388746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 26720301 - 26720439
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||   ||||||||||| ||| ||||||||||  ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  26720301 aatcgtggcacgatggctgagcaacgtggcaggattggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatgggatcgcatcgtggc 26720399  T
Q  349 acgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||| | ||||||| || |||| ||||||||||||    
T  26720400 acgatggtgtgctggcagcgaaaaacagaaacatattttt 26720439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 35777163 - 35777280
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| |||| |||||| |||| |||||||||||||  ||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  35777163 tgtgagagttaacttaaaattagatttctgcagaatcgtggcacgacagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 35777262  T
Q  317 aaaatcgtggcacgatgg 334  Q
    ||||||||||||||||||    
T  35777263 aaaatcgtggcacgatgg 35777280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 11162924 - 11163008
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11162924 aatcgtggcacgattgctgggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaattgtggcacgatgg 11163008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 10958767 - 10958689
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||    
T  10958767 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagccaataacagaaacgtattttt 10958689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 11170178 - 11170260
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgat 332  Q
    |||||||||||| | ||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  11170178 aatcgtggcacggttgctgggcaacgtggcacgatggaggtttcggtttttgaggcaaggcactggaaaaatcgtggctcgat 11170260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 6719651 - 6719532
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat---ggaggtttcagtttttgaggcaaggcact 313  Q
    ||||||| ||||||| ||||||| ||| ||| ||||||||||||||| | | |||| |||||||||||    ||||||||||||||| |||||| |||||    
T  6719651 tgtgagaattaacttaaaatcaggtttctgcttaatcgtggcacgattgaagggcatcgtggcacgattggagaggtttcagttttt-aggcaatgcact 6719553  T
Q  314 ggaaaaatcgtggcacgatgg 334  Q
    |||||||||||||||||||||    
T  6719552 ggaaaaatcgtggcacgatgg 6719532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 7606963 - 7606880
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttt 300  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||    
T  7606963 tgtgagagttaacttaaaatcaggtttctgcagaatcgtgacacgatggctgggcaacgtggcacgatggaggtttcagttttt 7606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 3859350 - 3859421
Alignment:
Q  319 aatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||| |||||||||||||||||||| |||| || ||||| |||||| |||||||||    
T  3859350 aatcgtggcacgatggggtcacatcgtggcacgatggtgcgctggcggcgaataatataaacgtatttttgg 3859421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 24177032 - 24177170
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||| | ||| |||||||||||||||| ||  ||||||||| | || ||||| |||||||||||  ||||||||||||| |||||  |||||    
T  24177032 aatcgtggcacgtttgcagggcaacgtggcacgattggttgtttcagttct-gaagcaagtcactggaaaaaatgtggcacgatgggatcgcaatgtggc 24177130  T
Q  349 acgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||||| |||  || || ||||||||| |||||||    
T  24177131 acgatggtgcgttggaggcgaaaaacataaacgtattttt 24177170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 6066254 - 6066195
Alignment:
Q  275 gtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    |||||||||||||||||| |||||||  |||||||||||||||| |||||||||||||||    
T  6066254 gtggcacgatggaggttttagttttttgggcaaggcactggaaacatcgtggcacgatgg 6066195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 45882752 - 45882832
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||| ||||||||| | ||| ||||||||||||||||| || || | ||||||| |||| |||||||||    
T  45882752 cactggaaaaatcgtgccacgatgggattgcaacgtggcacgatggtgcgctgacaacgaataacagaaacctatttttgg 45882832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 35777266 - 35777314
Alignment:
Q  341 atcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  35777266 atcgtggcacgatggtgcgctggcagcaaa-aacataaacatatttttgg 35777314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 3859315 - 3859365
Alignment:
Q  215 aatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatgg 265  Q
    ||||||||| ||||||| ||||||| ||| |||||||||||||||||||||    
T  3859315 aatgtgagagttaacttaaaatcaggtttctgcataatcgtggcacgatgg 3859365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 6719546 - 6719497
Alignment:
Q  341 atcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||||||| |||| || ||||||| ||||||||||||||    
T  6719546 atcgtggcacgatggtgcgctggcggcgaataacagaaacatatttttgg 6719497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 10084807 - 10084758
Alignment:
Q  340 catcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||||||||||||| ||||||| || |||| |||||||||||||    
T  10084807 catcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatttttg 10084758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 10191727 - 10191678
Alignment:
Q  340 catcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||||||||||||| ||||||| || |||| |||||||||||||    
T  10191727 catcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatttttg 10191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 38889861 - 38889910
Alignment:
Q  341 atcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||||||| |||| || ||||||| ||||||||||||||    
T  38889861 atcgtggcacgatggtgcgctggcggcgaataacagaaacatatttttgg 38889910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 388
Target Start/End: Original strand, 24979552 - 24979598
Alignment:
Q  342 tcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||||||||| || ||| ||| ||||||||||||||||||||    
T  24979552 tcgtggcacgatggtacgctggtagcgaataacataaacatattttt 24979598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 4308725 - 4308676
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    |||||||||||||||| |||||| || ||| |||||| ||||||||||||    
T  4308725 cactggaaaaatcgtgccacgattggatcgaatcgtgccacgatggtgcg 4308676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 18162508 - 18162557
Alignment:
Q  341 atcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||| |||||||||||| ||||||| ||||||| |||| |||||||||    
T  18162508 atcgtgccacgatggtgcgctggcagcgaataacagaaacgtatttttgg 18162557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 217 - 389
Target Start/End: Complemental strand, 14507716 - 14507542
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttt--gaggcaaggcactg 314  Q
    ||||||| ||||||| ||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||  ||  ||||||||||    
T  14507716 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggtttcagtttttttgatacaaggcactg 14507617  T
Q  315 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || |||| || |||| |||||||||||||    
T  14507616 gaaaaatggtggcacgatggggtcgcatcgtggcacgatggtgcgctgccagcgaaaaacagaaacatatttttg 14507542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 19227915 - 19227777
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 349  Q
    ||||||||||||||||   |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19227915 aatcgtggcacgatggttgggcaacgtggcatgatggaggtttcaatttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 19227816  T
Q  350 cgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    |||||||||| |||| || ||||||| ||||||||||||    
T  19227815 cgatggtgcgctggcggcgaataacagaaacatattttt 19227777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 26068882 - 26068735
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||  ||||||||||||||    
T  26068882 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggcaaggcaacgtggcatgatggaggttttagttttttgggcaaggcactgga 26068783  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  26068782 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 26068735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 250 - 387
Target Start/End: Original strand, 8995288 - 8995425
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  8995288 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttttg-ggcaaggcactggaaaaatcgtggcacgatggggtcacatcgtggc 8995386  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    ||||||||||| || |||||||||||| |||| ||||||    
T  8995387 acgatggtgcgctgacagcaaataacagaaacgtatttt 8995425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 250 - 387
Target Start/End: Original strand, 9019735 - 9019872
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  9019735 aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttttg-ggcaaggcactggaaaaatcgtggcacgatggggtcacatcgtggc 9019833  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    ||||||||||| || |||||||||||| |||| ||||||    
T  9019834 acgatggtgcgctgacagcaaataacagaaacgtatttt 9019872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 26066611 - 26066464
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| || | ||||||||||||| ||||||||||||||||||||||||||||| |||| ||  ||||||||||||||    
T  26066611 tgtgagagttaacttaaaatcaggtttctgtagaatcgtggcacgacggcaaggcaacgtggcacgatggaggttttagttatttgggcaaggcactgga 26066512  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  26066511 aaaatcgtggcacgatggggtctcatcgtggcacaatggtgcgctggc 26066464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 33308685 - 33308832
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  ||||||||||||||||||| |||||||  ||||||||||||||    
T  33308685 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcttcgtggcacgatggaggttttagttttttgggcaaggcactgga 33308784  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33308785 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 33308832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 33310954 - 33311101
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  ||||||||||||||||||| |||||||  ||||||||||||||    
T  33310954 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcttcgtggcacgatggaggttttagttttttgggcaaggcactgga 33311053  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33311054 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 33311101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 29755279 - 29755132
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  29755279 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 29755180  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29755179 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 29755132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 225 - 389
Target Start/End: Complemental strand, 11983558 - 11983396
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgt 324  Q
    ||||||| ||||||| ||| |||| |||||||| |||||||   |||||| ||| |||||||||||||||||| | |||| ||| |||||||||||||||    
T  11983558 ttaacttaaaatcaggtttctgcagaatcgtggtacgatggttgggcaacatggtacgatggaggtttcagttgt-gaggtaag-cactggaaaaatcgt 11983461  T
Q  325 ggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||||||    
T  11983460 ggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatttttg 11983396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 274 - 388
Target Start/End: Complemental strand, 4816749 - 4816636
Alignment:
Q  274 cgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaata 372  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |    
T  4816749 cgtggcacgattggaggtttcagtttt-gaggcaaggtactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgtgctggtagcaaa-a 4816652  T
Q  373 acataaacatattttt 388  Q
    ||| ||||||||||||    
T  4816651 acagaaacatattttt 4816636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 15530628 - 15530488
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||  || |||||||||| || ||||||||||  ||| ||||||| ||||| ||||| |||||| ||||||||| |||||||||||    
T  15530628 aatcgtggcacgatggctgggtaacgtggcacaattggaggtttcaagttt-gaggcaaagcactcgaaaattcgtggtacgatggggccgcatcgtggc 15530530  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||| | ||||||  ||| | | ||||||||||||||    
T  15530529 acgatggtgtgctggcagtgaattatagaaacatatttttgg 15530488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 30729284 - 30729194
Alignment:
Q  300 tgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||| |||||||||  ||||| |||||||||||| || ||||||||||| ||||| ||||||| ||||||| |||| |||||||||    
T  30729284 tgaggcaagtcactggaaatttcgtgccacgatggggtcacaacgtggcacgatagtgcgctggcagcgaataacagaaacgtatttttgg 30729194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 26084818 - 26084867
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||||||    
T  26084818 cactggaaaaatcgtgccacgattgaatcgcatcgtggcacgatggtgcg 26084867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 15533137 - 15533049
Alignment:
Q  300 tgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||| |||||||||  | ||| ||||||| | ||||| |||| ||| |||||||| ||| ||||||||| | ||||||||||||    
T  15533137 tgaggcaagtcactggaaattttgtgccacgatgagatcgcaacgtgtcacaatggtgcgctggtagcaaataagagaaacatattttt 15533049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 15541596 - 15541508
Alignment:
Q  300 tgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||| | |||||||||  || || ||||||| | ||||| |||||||||||||| || ||||||| |||| || ||||||||||||    
T  15541596 tgaggcacgtcactggaaatttcatgccacgatgagatcgcaacgtggcacgatggtacgctggcagcgaatagcagaaacatattttt 15541508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 24192733 - 24192663
Alignment:
Q  318 aaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    |||||||| ||||||||| | |||  |||||| ||||| ||| ||||||| ||||||| ||||||||||||    
T  24192733 aaatcgtgccacgatgggattgcaatgtggcatgatggggcgctggcagcgaataacagaaacatattttt 24192663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 32279845 - 32279910
Alignment:
Q  269 ggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    |||||||||||||||| ||| ||||||||| | |||||||| | |||||||| ||||||||||||||    
T  32279845 ggcaacgtggcacgattggatgtttcagttct-gaggcaagtcgctggaaaagtcgtggcacgatgg 32279910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 1072291 - 1072243
Alignment:
Q  342 tcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||| ||  |||||| |||||||||||| |||||||||    
T  1072291 tcgtggcacgatggtacgtaggcagcgaataacataaacgtatttttgg 1072243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 38881878 - 38882018
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 349  Q
    |||||||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38881878 aatcgtggcacgattgctgggcaacgtggcacgatggaggttttagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 38881977  T
Q  350 cgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||| |||| || ||||||| |||| |||||||||    
T  38881978 cgatggtgcgctggcggcgaataacagaaacgtatttttgg 38882018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 34477632 - 34477485
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||  ||| |||| |||||||||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  34477632 tgtgagagttaacttaaaatcaagtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 34477533  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34477532 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 34477485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 2174680 - 2174797
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2174680 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagttttttaggcaaggcactgga 2174779  T
Q  317 aaaatcgtggcacgatgg 334  Q
    ||||||||||||||||||    
T  2174780 aaaatcgtggcacgatgg 2174797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 31544798 - 31544971
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||| ||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  31544798 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtggcacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 31544897  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||| ||||| | |||||||||||| |||| |  || |||| ||||||||||||||    
T  31544898 aaaatcgtggcacgatggggtctcatcgagacacgatggtgcgctggcggataaaaacagaaacatatttttgg 31544971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 31542442 - 31542615
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||| |||||| ||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  31542442 tgtgagagttaacttaaaatcaggtttctgcaaaatcgtgacacgatagctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 31542541  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||| ||||| | |||||||||||| |||| |  || |||| ||||||||||||||    
T  31542542 aaaatcgtggcacgatggggtctcatcgagacacgatggtgcgctggcggataaaaacagaaacatatttttgg 31542615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 225 - 387
Target Start/End: Original strand, 4236378 - 4236540
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcg 323  Q
    ||||||| ||||||||||| |||| ||| |||||||||||||  |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  4236378 ttaacttaaaatcagatttctgcagaattgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttta-aggcaaggcactggaaaaatcg 4236476  T
Q  324 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||  || |||| |||| ||||||    
T  4236477 tggcacaatgggatcgcatcgtggcacgatggtgcgctggcagggaaaaacagaaacgtatttt 4236540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 10749505 - 10749652
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  10749505 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 10749604  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10749605 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 10749652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 16775930 - 16776069
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||  ||| ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  16775930 aatcgtggcacgatggcaaggcaacgtgacacgattggaggtttcaagttt-gaggcaaagcactgaaaaaatcgtggcacgatggggtcgcatcgtggc 16776028  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||||| ||||| | || |||| |||||||||||||    
T  16776029 acgatggtgcgctggcatcgaaaaacagaaacatatttttg 16776069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 10756960 - 10757107
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||| |||||| |||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  10756960 tgtgagagttaacttaaaatcaggtttctgcacaatcgtagcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 10757059  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10757060 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 10757107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 15355065 - 15354918
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  15355065 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 15354966  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15354965 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 15354918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 15357341 - 15357194
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  15357341 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 15357242  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15357241 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 15357194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 34479972 - 34479855
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  34479972 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 34479873  T
Q  317 aaaatcgtggcacgatgg 334  Q
    ||||||||||||||||||    
T  34479872 aaaatcgtggcacgatgg 34479855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 39797849 - 39797966
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||| |||    
T  39797849 tgtgagagttaacttaaaatcaggtttctgcataatcgtggcacgatggctgggcaacgtggcatgatggaggtttcagtttttgaggcaaggcaccgga 39797948  T
Q  317 aaaatcgtggcacgatgg 334  Q
    |||||| |||||||||||    
T  39797949 aaaatcatggcacgatgg 39797966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 25921993 - 25921874
Alignment:
Q  216 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagt-ttttgaggcaaggcactg 314  Q
    |||||||| ||||||| ||||||| ||| |||| ||||||||||||||||   | |||||||||||||||||||||||||| ||||||||||||||||||    
T  25921993 atgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggttggacaacgtggcacgatggaggtttcagttttttgaggcaaggcactg 25921894  T
Q  315 gaaaaatcgtggcacgatgg 334  Q
    ||||||||||||||||||||    
T  25921893 gaaaaatcgtggcacgatgg 25921874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 216 - 364
Target Start/End: Original strand, 23664833 - 23664981
Alignment:
Q  216 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgg 315  Q
    |||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||| ||| | |||||  || ||||||||||    
T  23664833 atgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggagtttttatttttttgggaaaggcactgg 23664932  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23664933 aaaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggc 23664981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 216 - 364
Target Start/End: Complemental strand, 23793754 - 23793606
Alignment:
Q  216 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgg 315  Q
    |||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||| ||| | |||||  || ||||||||||    
T  23793754 atgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggagtttttatttttttgggaaaggcactgg 23793655  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23793654 aaaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggc 23793606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 23667109 - 23667256
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||| ||| | |||||  || |||||||||||    
T  23667109 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggagtttttatttttttgggaaaggcactgga 23667208  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23667209 aaaatcgtggcacgatgggatcgcatcgtggcacgatggtgcgctggc 23667256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 31179897 - 31179807
Alignment:
Q  274 cgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  31179897 cgtggcacgatggaggttttagttttttgggcaagacactggaaaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 31179807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 21684909 - 21684828
Alignment:
Q  308 ggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||||||    
T  21684909 ggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatttttg 21684828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 659746 - 659829
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  659746 aatcgtggcacgatggctaggcaacgtggcacgattggaggtttcagttt--gaggcaagtcactggaaaaatcgtggcacgatgg 659829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 38960604 - 38960487
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||   | |||||||||||||||| |||||||  ||||||||||||||    
T  38960604 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggctttgcggcacgatggaggttttagttttttgggcaaggcactgga 38960505  T
Q  317 aaaatcgtggcacgatgg 334  Q
    ||||||||||||||||||    
T  38960504 aaaatcgtggcacgatgg 38960487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 21947803 - 21947940
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||| ||| |||||||     |||||||||||||| | ||| ||||||    
T  21947803 aatcgtggcacgatggctaggcaacgtgacacgattggaggtttcag-ttttgaggtaagtcactggactttacgtggcacgatgggattgcaacgtggc 21947901  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||   |||||||| ||||||| ||||||||||||||    
T  21947902 acgatggt---gtggcagcgaataacagaaacatatttttgg 21947940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 659929 - 659850
Alignment:
Q  272 aacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacga 352  Q
    ||||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  659929 aacgtggcacgattggaggtttcagttt--gaggcaagtcactggaaaaatcgtggcacgatgaggtcgcattgtggcacga 659850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 315
Target Start/End: Complemental strand, 18186589 - 18186489
Alignment:
Q  215 aatgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcact 313  Q
    ||||||||| ||||||| ||||||  ||| |||| |||||||| ||||||||  ||||||||||||||| |||||||||||| |||||||||||| ||||    
T  18186589 aatgtgagagttaacttaaaatcaagtttctgcagaatcgtggtacgatggctgggcaacgtggcacgattggaggtttcag-ttttgaggcaagtcact 18186491  T
Q  314 gg 315  Q
    ||    
T  18186490 gg 18186489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 31466496 - 31466379
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcat-aatcgtggcacgatggcaaggcaacgtggcacgatg-gaggtttcagtttttgaggcaaggcactg 314  Q
    ||||||| ||||||| ||||||| ||| ||||  |||||||||||||| | | ||||||||||||||||| || ||||||||| | |||||||| |||||    
T  31466496 tgtgagagttaacttaaaatcaggttt-tgcaggaatcgtggcacgattgaagggcaacgtggcacgatgagatgtttcagttat-gaggcaagtcactg 31466399  T
Q  315 gaaaaatcgtggcacgatgg 334  Q
    |||||||| |||||||||||    
T  31466398 gaaaaatcttggcacgatgg 31466379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 2818813 - 2818729
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||||| |||||||||||| |||||||    ||||||||||||||    
T  2818813 aatcgtggcacgatggctaggcaacatggcacgattggaggtttcag-ttttgaggcaagtcactggatttttcgtggcacgatgg 2818729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 20507968 - 20507828
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||| |   |||||||| ||||||| |||||||| |||||| |||||||| || ||||    ||||||||||||||| | ||| | ||||    
T  20507968 aatcgtggcacgatagttgggcaacgtagcacgattggaggttttagtttt-gaggcaagtcattggatttttcgtggcacgatgggattgcaacatggc 20507870  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||| |||||| | ||||| ||||||| ||||||||||||||    
T  20507869 acgaaggtgcgctagcagcgaataacagaaacatatttttgg 20507828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 353
Target Start/End: Complemental strand, 20504419 - 20504316
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||| || |||||||||||| || ||||    ||||||||||||||| | ||| ||||||    
T  20504419 aatcgtggcacgatagctgggcaacgtggcacgattggaggttttag-ttttgaggcaagtcaatggatttttcgtggcacgatgggattgcaacgtggc 20504321  T
Q  349 acgat 353  Q
    |||||    
T  20504320 acgat 20504316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 21684969 - 21684905
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcac 281  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||||    
T  21684969 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcac 21684905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 39797956 - 39798001
Alignment:
Q  345 tggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  39797956 tggcacgatggtgcgctggcagcgaataacagaaacatatttttgg 39798001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 36402845 - 36402747
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| |||| || ||| |||| ||||  |||||||||||  |||||| | |||||| |||||||||||| |||||||||||| ||||||    
T  36402845 tgtgagagttaacttaaaattaggtttctgcagaatctaggcacgatggctgggcaacatagcacgattggaggtttcag-ttttgaggcaagtcactgg 36402747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 388
Target Start/End: Original strand, 6756359 - 6756405
Alignment:
Q  342 tcgtggcacgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    |||||||||||||||||| ||||||| ||||||| |||| |||||||    
T  6756359 tcgtggcacgatggtgcgctggcagcgaataacagaaacgtattttt 6756405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 39854317 - 39854366
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    |||||||||||||||| |||| | |  |||||||||||||||||||||||    
T  39854317 cactggaaaaatcgtgtcacggttgaatcgcatcgtggcacgatggtgcg 39854366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 42238047 - 42238096
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    |||||||||||||||| |||||||   ||||| |||||||||||||||||    
T  42238047 cactggaaaaatcgtgccacgatgaaatcgcaacgtggcacgatggtgcg 42238096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 1240171 - 1240219
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgc 358  Q
    |||||||||||||||| |||||| || ||| |||||| |||||||||||    
T  1240171 cactggaaaaatcgtgccacgattggatcgaatcgtgccacgatggtgc 1240219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 4409890 - 4409946
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcag 366  Q
    |||||||||||||||| ||| || || ||| |||||| |||||||||||| ||||||    
T  4409890 cactggaaaaatcgtgccacaattggatcgaatcgtgccacgatggtgcgatggcag 4409946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 12556408 - 12556325
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatg 333  Q
    ||||||||||  |||||  ||||||||||||| || ||||||||||||||| |||||||| |||||||    |||||||||||||    
T  12556408 aatcgtggcataatggctgggcaacgtggcacaattggaggtttcagtttt-gaggcaagtcactggatttttcgtggcacgatg 12556325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 31179933 - 31179885
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatgg 265  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||||    
T  31179933 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatgg 31179885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 36402741 - 36402693
Alignment:
Q  342 tcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||| ||||| | ||||||| |||| |||||||||    
T  36402741 tcgtggcacgatggtgcgttggcaacgaataacagaaacgtatttttgg 36402693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 13054 - 12907
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  13054 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatgtcaaggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 12955  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  12954 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 18812668 - 18812815
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| || | ||||||||||||| |||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  18812668 tgtgagagttaacttaaaatcaggtttctgaagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttaggcaaggcactgga 18812767  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18812768 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 18812815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 43079347 - 43079494
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  43079347 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggcaaggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 43079446  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  43079447 aaaatcgtggtacgatggggtctcatcgtggcacgatggtgcgctggc 43079494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 27826815 - 27826954
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 349  Q
    |||||||||||||| ||  |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||    
T  27826815 aatcgtggcacgattgctgggcaacgtggcacgatggaggtttcattttttgaagcaaagcactggaaaaatcgtggcacgatgggatcgcatcgtggca 27826914  T
Q  350 cgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||| ||||||| || |||| |||||||||||||    
T  27826915 cgatggtgcgctggcagcgaaaaacaaaaacatatttttg 27826954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 27829126 - 27829265
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggca 349  Q
    |||||||||||||| ||  |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  27829126 aatcgtggcacgattgctgggcaacgtggcacgatggaggtttcattttttgaggcaaaacactggaaaaatcgtggcacgatgggatcgcatcgtggca 27829225  T
Q  350 cgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||| ||||||| || |||| |||||||||||||    
T  27829226 cgatggtgcgctggcagcgaaaaacaaaaacatatttttg 27829265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 217 - 356
Target Start/End: Original strand, 43081722 - 43081861
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||||||||| |||||||||||||||||| |||||||  ||||||||||||||    
T  43081722 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggcaaggcaaagtggcacgatggaggttttagttttttgggcaaggcactgga 43081821  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggt 356  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  43081822 aaaatcgtggcacgatggggtctcatcgtggcacgatggt 43081861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 250 - 389
Target Start/End: Complemental strand, 12517532 - 12517393
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  12517532 aatcgtggcacgatggcaaggcaacgtggcacgattggaggtttcagtttt-gaggcaatgtactggaaaaatcgtggcacgatgggatcgcatcgtggc 12517434  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||| | ||||||| || |||| |||||||||||||    
T  12517433 acgatggtgtgctggcagcgaaaaacagaaacatatttttg 12517393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 18810483 - 18810630
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| | ||||| |||||||||||||||    
T  18810483 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttatttttttaggcaaggcactgga 18810582  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||| | |||||||||||||| |||||||||||||||||||| ||||    
T  18810583 aaaattgcggcacgatggggtcacatcgtggcacgatggtgcgctggc 18810630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 44720617 - 44720790
Alignment:
Q  217 tgtgagatttaacttcaaatcagattta-tgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactg 314  Q
    ||||||| ||||||| ||||||| |||  |||| |||||||||| ||| ||  ||||  |||||||| | ||||||||||||||| ||||||||| ||||    
T  44720617 tgtgagagttaacttaaaatcaggttttctgcagaatcgtggcatgattgctgggcattgtggcacgtttggaggtttcagtttt-gaggcaaggtactg 44720715  T
Q  315 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  44720716 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcaaa-aacagaaacatatttttgg 44720790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 225 - 387
Target Start/End: Original strand, 14807556 - 14807718
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcg 323  Q
    ||||||| ||||||| ||| |||| |||||||||| |||||   ||||||||| |||||| ||||||||||  ||| ||||||| |||||||||||||||    
T  14807556 ttaacttaaaatcaggtttctgcagaatcgtggcatgatggttgggcaacgtgacacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcg 14807654  T
Q  324 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| || ||||||||| ||||||    
T  14807655 tggcacgatggggtcgcatcgtggcacggtggtgcgctggcagcgaaaaacataaacgtatttt 14807718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 390
Target Start/End: Original strand, 15067785 - 15067950
Alignment:
Q  225 ttaacttcaaatcagatttatgcat-aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatc 322  Q
    ||||||| ||||||||||| ||||  |||||||||| ||||||  |||||| ||||||||| ||||||||||||||| || ||||| |||||||||||||    
T  15067785 ttaacttaaaatcagattt-tgcaggaatcgtggcaagatggctgggcaacatggcacgattggaggtttcagtttt-gaagcaagccactggaaaaatc 15067882  T
Q  323 gtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
     || ||||||||| ||||| ||||||||||||||||| ||||||| ||||||| |||| |||||||||    
T  15067883 atgccacgatgggatcgcaacgtggcacgatggtgcgctggcagcgaataacaaaaacgtatttttgg 15067950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 15072506 - 15072679
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcat-aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactg 314  Q
    ||||||| ||||||| ||||||||||  ||||  ||||||| |||||||||  ||||||||| |||||| ||||||||||||||| || ||||| ||||     
T  15072506 tgtgagagttaacttaaaatcagattc-tgcaggaatcgtgacacgatggctgggcaacgtgacacgattggaggtttcagtttt-gaagcaagccacta 15072603  T
Q  315 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||||| ||||||| |||| |||||||||    
T  15072604 gaaaaatcgtgtcacgatgggatcgcaacgtggcatgatggtgcgctggcagcgaataacagaaacgtatttttgg 15072679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 28252093 - 28251988
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||  ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  28252093 aatcgtggcacgatggctaggcaacgtggtacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatgggatcgcatcgtggc 28251995  T
Q  349 acgatgg 355  Q
    |||||||    
T  28251994 acgatgg 28251988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 3886412 - 3886322
Alignment:
Q  245 tgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagt-ttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    |||| ||||||| || ||||||  | |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  3886412 tgcagaatcgtgacatgatggctggacaacgtggcacgatggaggtttcagttttttgaggcaagacactggaaaaatcgtggtacgatgg 3886322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 4423868 - 4423952
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatgg 334  Q
    ||||||||||| || ||  ||||||||||||| || |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  4423868 aatcgtggcacaattgctgggcaacgtggcacaattggaggtttcagtttta-aggcaaggcactggaaaaatcgtggcacgatgg 4423952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 28252002 - 28251935
Alignment:
Q  320 atcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||| || |||| |||| ||||||    
T  28252002 atcgtggcacgatgggatcgcatcgtggtacgatggtgcgttggcagcgaaaaacagaaacgtatttt 28251935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 4423938 - 4423986
Alignment:
Q  341 atcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    ||||||||||||||||||| ||||||| || || | |||||||||||||    
T  4423938 atcgtggcacgatggtgcgctggcagcgaaaaatagaaacatatttttg 4423986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 387
Target Start/End: Original strand, 3878322 - 3878492
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||||||| |||| |||||||||||||||||  |||||||||||||||| ||||||||||  ||| ||||||| |||||||    
T  3878322 tgtgagagttaacttaaaatcagatttctgcagaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactgg 3878420  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||| ||||||    
T  3878421 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtacgctggcagcgaataacagaaacgtatttt 3878492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 1047503 - 1047356
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  1047503 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgacggctgggcaacgtggcacgatggaggttttagttttttgggcaaggcactgga 1047404  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  1047403 aaaatcgtggcacgatggggtctcatcgtggcacgatggtgcgctggc 1047356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 2935070 - 2935217
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  2935070 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 2935169  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2935170 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 2935217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 9027687 - 9027540
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  9027687 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 9027588  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9027587 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 9027540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 216 - 390
Target Start/End: Complemental strand, 27306768 - 27306595
Alignment:
Q  216 atgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactg 314  Q
    |||||||| ||||||| |||| || ||| |||| |||||||||||||||||  | |||||||||||||| ||||||||||||||| |||||||| || ||    
T  27306768 atgtgagagttaacttaaaataaggttt-tgcaaaatcgtggcacgatggctggacaacgtggcacgattggaggtttcagtttt-gaggcaagtcattg 27306671  T
Q  315 gaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||| |||| |||||||||    
T  27306670 gaaaaatcgtggcacgatggggtcgcttcgtggcacgatggtgcgctagcagcgaataacagaaacgtatttttgg 27306595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 22136878 - 22137025
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  22136878 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 22136977  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22136978 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 22137025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 40551905 - 40552052
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  40551905 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 40552004  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40552005 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 40552052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 35412 - 35552
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||| || ||||||||||||||||| ||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35412 aatcgtggcacgattgctaggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcgtggcacgatggggtcgcatcgtggc 35510  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
     |||| ||||| |||||||||||| || |||| |||||||||    
T  35511 ccgatcgtgcgctggcagcaaatagcagaaacgtatttttgg 35552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 250 - 390
Target Start/End: Original strand, 44347 - 44487
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    ||||||||||||||  |  ||||| |||||||||| ||||||||||  ||| || |||| |||||||||||||| |||||||||||||||||||||||||    
T  44347 aatcgtggcacgatttctgggcaatgtggcacgattggaggtttcaagttt-gacgcaaagcactggaaaaatcatggcacgatggggtcgcatcgtggc 44445  T
Q  349 acgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  44446 acgatggtgcgctggcagcaaataacataaacatatttttgg 44487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 22107867 - 22108014
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || ||||||||| |||||| |||||||  ||||||||||||||    
T  22107867 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatgcaggttttagttttttgggcaaggcactgga 22107966  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22107967 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 22108014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 254 - 388
Target Start/End: Original strand, 25542317 - 25542451
Alignment:
Q  254 gtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacga 352  Q
    |||||||||| ||  |||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  25542317 gtggcacgattgctgggcaacgtggcacgattggaggtttcagtttta-aggcaaggcacttgaaaaatcgtggcacgatgggatcgcatcgtggcacga 25542415  T
Q  353 tggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||| ||||||| || |||| ||||||||||||    
T  25542416 tggtgcgctggcagcgaaaaacagaaacatattttt 25542451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 40549627 - 40549774
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || ||||||||| |||||| |||||||  ||||||||||||||    
T  40549627 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatgcaggttttagttttttgggcaaggcactgga 40549726  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40549727 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 40549774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 40837261 - 40837144
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||||   | |||||||||||||||||||||||||||||| |||||||||||||||    
T  40837261 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggtcggacaacgtggcacgatggaggtttcagttttttaggcaaggcactgga 40837162  T
Q  317 aaaatcgtggcacgatgg 334  Q
    ||||||||||||||||||    
T  40837161 aaaatcgtggcacgatgg 40837144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 26804345 - 26804462
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactgg 315  Q
    ||||||| ||||||| ||||||| ||| | || |||||||||||||||||  |||||||||| ||||| ||||||||||||||| ||||||||||| |||    
T  26804345 tgtgagagttaacttaaaatcaggtttctacagaatcgtggcacgatggctgggcaacgtggtacgattggaggtttcagtttt-gaggcaaggcagtgg 26804443  T
Q  316 aaaaatcgtggcacgatgg 334  Q
    |||||||||||||||||||    
T  26804444 aaaaatcgtggcacgatgg 26804462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 18567396 - 18567534
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||| ||  ||||| |||||||||| ||||||||||||||| |||||||| |||||||    |||||||||||||||||| || | ||||    
T  18567396 aatcgtggcacgatagctgggcaaagtggcacgattggaggtttcagtttt-gaggcaagtcactggatttttcgtggcacgatggggtcacaacttggc 18567494  T
Q  349 acgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||||| ||||| | ||||||| |||| |||||||    
T  18567495 acgatggtgcgctggcaacgaataacagaaacgtattttt 18567534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 31435553 - 31435415
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggc 348  Q
    |||||||||||||| ||  ||||| |||||||||| ||||||||||||||| |||||||| |||||||    |||||||||||||||||| || | ||||    
T  31435553 aatcgtggcacgatagctgggcaaagtggcacgattggaggtttcagtttt-gaggcaagtcactggatttttcgtggcacgatggggtcacaacttggc 31435455  T
Q  349 acgatggtgcggtggcagcaaataacataaacatattttt 388  Q
    ||||||||||| ||||| | ||||||| |||| |||||||    
T  31435454 acgatggtgcgctggcaacgaataacagaaacgtattttt 31435415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 1049780 - 1049699
Alignment:
Q  250 aatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacga 331  Q
    |||||||||||||| ||  |||||||||||||||| ||||||||||||||| || |||||| |||||||||||||||||||||    
T  1049780 aatcgtggcacgattgctgggcaacgtggcacgattggaggtttcagtttt-gaagcaaggtactggaaaaatcgtggcacga 1049699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 26804448 - 26804494
Alignment:
Q  341 atcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  26804448 atcgtggcacgatggtgcgctggcagcaaataacagaaacgtatttt 26804494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 42006404 - 42006486
Alignment:
Q  304 gcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    ||||| ||||| |||||||||||||||||||  ||| | |||||||||||||| | || | || ||||||||||||| ||||||    
T  42006404 gcaagtcactgaaaaaatcgtggcacgatggaatcgtaacgtggcacgatggtac-gttgaaggaaataacataaacgtatttt 42006486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 40946167 - 40946216
Alignment:
Q  310 cactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcg 359  Q
    |||||||||||||||| |||||| || ||| |||||| ||||||||||||    
T  40946167 cactggaaaaatcgtgtcacgattggatcgaatcgtgccacgatggtgcg 40946216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 258 - 390
Target Start/End: Original strand, 2670 - 2802
Alignment:
Q  258 cacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggt 356  Q
    |||||| || ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  2670 cacgattgctaggcaacgtggcacgattggaggtttcagtttt-gaggcaaggtactggaaaaatcgtggcacgatgggatcgcatcgtggcacgatggt 2768  T
Q  357 gcggtggcagcaaataacataaacatatttttgg 390  Q
    ||| ||||||| |||||||||||| |||||||||    
T  2769 gcgctggcagcgaataacataaacgtatttttgg 2802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 21915 - 22062
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  21915 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 22014  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22015 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 22062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 24190 - 24337
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||  ||  |||  || |||||||||||||||| |||||||  ||||||||||||||    
T  24190 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacagctgggcttcgcggcacgatggaggttttagttttttgggcaaggcactgga 24289  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24290 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggc 24337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 225 - 387
Target Start/End: Complemental strand, 69825 - 69663
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgat-ggaggtttcagtttttgaggcaaggcactggaaaaatcg 323  Q
    ||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||  ||| ||||||| |||||||||||||||    
T  69825 ttaacttaaaatcagatttctgcagaatcgtggcacgatggctaggcaacgtggcacgattggaggtttcaagttt-gaggcaaagcactggaaaaatcg 69727  T
Q  324 tggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttt 387  Q
    | |||| ||||| ||||||||| ||||||||||| | ||||||| || |||| |||||||||||    
T  69726 tagcacaatgggatcgcatcgttgcacgatggtgtgctggcagcgaaaaacagaaacatatttt 69663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 73536 - 73427
Alignment:
Q  225 ttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactggaaaaatcg 323  Q
    ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||   |||||||||| ||||||||||||| |    
T  73536 ttaacttaaaatcagatttatgcagaatcgtggcacgatggctaggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactggaaaaattg 73438  T
Q  324 tggcacgatgg 334  Q
    |||||||||||    
T  73437 tggcacgatgg 73427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 364
Target Start/End: Original strand, 5927 - 6074
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcacgatggaggtttcagtttttgaggcaaggcactgga 316  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||| |||  |||  || |||||||||||||||| ||||||| |||||||||||||||    
T  5927 tgtgagagttaacttaaaatcaggtttctgcacaatcgtggcacgacggctgggcttcgcggcacgatggaggttttagttttttaggcaaggcactgga 6026  T
Q  317 aaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggc 364  Q
    |||||||||||| ||||||||| |||| ||||||||||||||| ||||    
T  6027 aaaatcgtggcatgatggggtctcatcatggcacgatggtgcgctggc 6074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 29001 - 29082
Alignment:
Q  308 ggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttg 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||||||    
T  29001 ggcactggaaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcgctggcagcgaaaaacagaaacatatttttg 29082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 28941 - 29005
Alignment:
Q  217 tgtgagatttaacttcaaatcagatttatgcataatcgtggcacgatggcaaggcaacgtggcac 281  Q
    ||||||| ||||||| ||||||| ||| |||| |||||||||||||||||  |||||||||||||    
T  28941 tgtgagagttaacttaaaatcaggtttctgcagaatcgtggcacgatggctgggcaacgtggcac 29005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 390
Target Start/End: Original strand, 14768 - 14941
Alignment:
Q  218 gtgagatttaacttcaaatcagatttatgcat-aatcgtggcacgatggcaaggcaacgtggcacgatgg-aggtttcagtttttgaggcaaggcactgg 315  Q
    |||||| ||||||| |||||||  || ||||  |||||||||||||| | | |||||||||| ||||||| | ||||||||| | |||||||| ||||||    
T  14768 gtgagagttaacttaaaatcaggattctgcaggaatcgtggcacgattgaagggcaacgtggaacgatgggaagtttcagttat-gaggcaagtcactgg 14866  T
Q  316 aaaaatcgtggcacgatggggtcgcatcgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    |||  ||||||||||||||| || || |||| |||||||||||| ||||||| ||||||| ||||||||||||||    
T  14867 aaatttcgtggcacgatgggatcacaacgtgacacgatggtgcgctggcagcgaataacagaaacatatttttgg 14941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 3872 - 3919
Alignment:
Q  343 cgtggcacgatggtgcggtggcagcaaataacataaacatatttttgg 390  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||    
T  3872 cgtggcacgatggtgcgatggcagcgaataacataaacgtatttttgg 3919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University