View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_317 (Length: 221)
Name: NF9595A_low_317
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_317 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 41311027 - 41311215
Alignment:
| Q |
22 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311027 |
attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
41311126 |
T |
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| Q |
122 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacattcatttcagtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41311127 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtc |
41311215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 43164710 - 43164893
Alignment:
| Q |
27 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
126 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| ||||||||||| | | ||| || |
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| T |
43164710 |
gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa |
43164809 |
T |
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| Q |
127 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacattcatttcagtc |
210 |
Q |
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| T |
43164810 |
tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtc |
43164893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 30165883 - 30165712
Alignment:
| Q |
27 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
126 |
Q |
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| T |
30165883 |
gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- |
30165795 |
T |
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| Q |
127 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacattcatttcagtc |
210 |
Q |
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||| | || || ||| ||| ||||| |||||| || |||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
30165794 |
-cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtc |
30165712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 28180965 - 28181038
Alignment:
| Q |
125 |
aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataaca |
198 |
Q |
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| T |
28180965 |
aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataaca |
28181038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 30124981 - 30125158
Alignment:
| Q |
22 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
121 |
Q |
| |
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|||| |||||| |||||||||| |||||||| || | |||||| | | |||||| ||| ||||||| |||||||| | |||||||||| | || || |
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| T |
30124981 |
attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag |
30125080 |
T |
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| Q |
122 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacat |
199 |
Q |
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||||||| |||||||| ||| ||| ||||| | ||||||| |||| |||||||||||||||||||| |||||||| |
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| T |
30125081 |
agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacat |
30125158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 30120068 - 30120116
Alignment:
| Q |
155 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacattcat |
203 |
Q |
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||||||| | |||| |||||||||||||||||||||||||||||||||| |
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| T |
30120068 |
tctctgatattgtcgtttcctttaaatcaaaggcaataataacattcat |
30120116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 30131068 - 30131112
Alignment:
| Q |
155 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacat |
199 |
Q |
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||||||||| ||||||||||||||||| |||||| |||||||||| |
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| T |
30131068 |
tctctgacattgtcatttcctttaaattaaaggctataataacat |
30131112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
| Q |
24 |
tgtgtattcttgcatcacccatatcttaagtgta |
57 |
Q |
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| T |
30130934 |
tgtgtattcttgcatcacccatatcttaactgta |
30130967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 21426703 - 21426644
Alignment:
| Q |
140 |
catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacat |
199 |
Q |
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||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||||| |
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| T |
21426703 |
catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacat |
21426644 |
T |
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