View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_318 (Length: 221)

Name: NF9595A_low_318
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_318
NF9595A_low_318
[»] chr6 (7 HSPs)
chr6 (25-202)||(28097221-28097398)
chr6 (75-190)||(29827263-29827378)
chr6 (24-103)||(28186620-28186699)
chr6 (24-100)||(28326704-28326780)
chr6 (24-100)||(28504340-28504416)
chr6 (24-103)||(28296617-28296696)
chr6 (24-103)||(28515377-28515456)
[»] chr2 (1 HSPs)
chr2 (24-187)||(3280885-3281048)
[»] chr5 (1 HSPs)
chr5 (24-202)||(16692093-16692271)
[»] scaffold0019 (1 HSPs)
scaffold0019 (39-202)||(57072-57235)
[»] chr4 (1 HSPs)
chr4 (23-109)||(5089821-5089907)
[»] chr8 (1 HSPs)
chr8 (165-202)||(31906421-31906458)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 28097398 - 28097221
Alignment:
Q  25 taaattattctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatga 124  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097398 taaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatga 28097299  T
Q  125 aagaattcctagcgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097298 aagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 28097221  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 29827263 - 29827378
Alignment:
Q  75 ttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagcgaagagattcaaaaaatacttcgtgtgagttttgatg 174  Q
    |||| ||||||| |||||||||||||||| ||| | || ||| |||||||||| |||||||   ||||||| ||||| ||||||    | ||||||||||    
T  29827263 ttgtttggaaagaatatagaagaatggaaatctatattagatagatatgaaaggattcctaataaagagatccaaaatatacttaaaataagttttgatg 29827362  T
Q  175 ctttggaggaagatga 190  Q
    ||||||||||||||||    
T  29827363 ctttggaggaagatga 29827378  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 28186620 - 28186699
Alignment:
Q  24 gtaaattattctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 103  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| |||||||||    
T  28186620 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataggagaatggaa 28186699  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 28326704 - 28326780
Alignment:
Q  24 gtaaattattctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 100  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28326704 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28326780  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 28504340 - 28504416
Alignment:
Q  24 gtaaattattctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 100  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28504340 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28504416  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 28296696 - 28296617
Alignment:
Q  24 gtaaattattctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 103  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28296696 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28296617  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 28515377 - 28515456
Alignment:
Q  24 gtaaattattctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 103  Q
    |||| |||| || |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28515377 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28515456  T

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Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 3280885 - 3281048
Alignment:
Q  24 gtaaattattctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatg 123  Q
    ||||||||| || |||||||||||||||| || ||| |||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||    
T  3280885 gtaaattatgcttctggccttccattggcattagaagtattaggttccaacttgtttggaaagaatataaaagagtggaattctttgttggatcgatatg 3280984  T
Q  124 aaagaattcctagcgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaaga 187  Q
    |||| |||||||   |||||||||| || ||||||   ||||||||||||||||||||||||||    
T  3280985 aaaggattcctaataaagagattcagaagatacttaaagtgagttttgatgctttggaggaaga 3281048  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 16692093 - 16692271
Alignment:
Q  24 gtaaattattctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatg 123  Q
    |||| |||| || ||||||||||||| || || ||| || |||| || ||||||| ||||||| |||||||||||||||| |||   || ||||||||||    
T  16692093 gtaacttatgcttctggccttccattagctttagaagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatctacatttgatcgatatg 16692192  T
Q  124 aaagaattcctagcgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 202  Q
    || | |||||| |  ||   ||||| |||||||||   || |||||||||  ||||||||||||||| | |||||||||    
T  16692193 aatggattcctggtaaacgaattcacaaaatacttaaagtaagttttgatagtttggaggaagatgaaaagagtgtttt 16692271  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 57235 - 57072
Alignment:
Q  39 ggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagcg 138  Q
    ||||||||||||||||| ||| || | ||||| ||||||| ||||||| |||||| ||||||||| |||   ||  |||  |||||||| ||||| |       
T  57235 ggccttccattggccttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccatta 57136  T
Q  139 aagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 202  Q
    || |||| ||| | ||||||   || || ||||||||||||||||||||||||| || ||||||    
T  57135 aaaagatccaagagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttt 57072  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 5089907 - 5089821
Alignment:
Q  23 ggtaaattattctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattcttt 109  Q
    ||||| |||| || |||||||||||||||| || ||| |  | |||||||| |||| ||||||| |||||||| ||||||| |||||    
T  5089907 ggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatatagaaaaatggaaatcttt 5089821  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 31906421 - 31906458
Alignment:
Q  165 agttttgatgctttggaggaagatgagaggagtgtttt 202  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  31906421 agttttgatgctttggaggaagatgagaaaagtgtttt 31906458  T

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