View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_320 (Length: 219)
Name: NF9595A_low_320
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_320 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 11027622 - 11027780
Alignment:
| Q |
13 |
tccaagaatatcttgttaacctacaaatctcaggttttgtgccttctcatcagatggaaaaggaaaaaatgaaagagtcgtgtcagtaaaacacaaactc |
112 |
Q |
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| T |
11027622 |
tccaacaaaatcttgttaacctccaaatctcaggttctgtgccttctcatcagatggaaaaggaaaaaatgaaagagtcgtgtcagtaaaacacaaactc |
11027721 |
T |
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| Q |
113 |
ccataaaactctctcagtagatcaagtctttcatgaagtggagtatattgattagaaat |
171 |
Q |
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| T |
11027722 |
ccataaaactctctcagtagatcaagtcattcattaagtggaatatattgattagaaat |
11027780 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 11042566 - 11042627
Alignment:
| Q |
76 |
aaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaactctctcagtagatcaa |
137 |
Q |
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| T |
11042566 |
aaaaaatgaaatagtcatgttagtaaaacagaaacacccataaaactctgtcagtagatcaa |
11042627 |
T |
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