View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_324 (Length: 218)
Name: NF9595A_low_324
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_324 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 11027632 - 11027780
Alignment:
| Q |
22 |
tcttgttaacctacaaatctcaggttttgtgccttctcatcagatggaaaaggaaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaact |
121 |
Q |
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| T |
11027632 |
tcttgttaacctccaaatctcaggttctgtgccttctcatcagatggaaaaggaaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaact |
11027731 |
T |
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| Q |
122 |
ctctcagtagatcaagtctttcatgaagtggagtatattgattagaaat |
170 |
Q |
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| T |
11027732 |
ctctcagtagatcaagtcattcattaagtggaatatattgattagaaat |
11027780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 11042566 - 11042627
Alignment:
| Q |
75 |
aaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaactctctcagtagatcaa |
136 |
Q |
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| T |
11042566 |
aaaaaatgaaatagtcatgttagtaaaacagaaacacccataaaactctgtcagtagatcaa |
11042627 |
T |
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