View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_329 (Length: 216)
Name: NF9595A_low_329
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_329 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 31457782 - 31457962
Alignment:
| Q |
17 |
atgaagaccactaaaatagccttgagggttgttttcaaatgcaccacgagatatgtatgatccaccacctcccggtgctttcattgaatccccaccacca |
116 |
Q |
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| T |
31457782 |
atgaagaccactaaaatagccttgagggttgttttcaaatgcaccacgagatatgtatgatccaccacctccaggtgctttcattgaatccccaccacca |
31457881 |
T |
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| Q |
117 |
ctgccaccggtggaccctttgcttcc---accgccgcctccctttgcgccacctccaccaccaccttttgaaccaccgcta |
194 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
31457882 |
ctgccaccggtggaccctttgcttccggtaccaccgcctccttttgcgccacctccaccaccaccttttgcaccaccgcta |
31457962 |
T |
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Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 49085731 - 49085892
Alignment:
| Q |
17 |
atgaagaccactaaaatagccttgagggttgttttcaaatgcaccacgagatatgtatgatccaccacctcccggtgctttcattgaatccccaccacca |
116 |
Q |
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||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49085731 |
atgaagaccaccaaaatagccttgtgggttgctttcaaatgcaccacgagatatgtatgatccaccacctcccggtgctttcattgaatctccaccacca |
49085830 |
T |
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| Q |
117 |
ctgccaccggtggaccctttgcttccaccgccgcctccctttgcgccacctccaccaccacc |
178 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||| |
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| T |
49085831 |
ctgccaccggtggaccctttgcttccaccaccgcctccttttgtgccacctcctccaccacc |
49085892 |
T |
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