View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_330 (Length: 216)
Name: NF9595A_low_330
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_330 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 25802097 - 25801903
Alignment:
| Q |
7 |
cgttgtgctcgaatctgagtttgtgttttgggtggctgaaatgggatatctcactgtattacattgttctgtttcttctctgtttgtttgtgtgatattg |
106 |
Q |
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| T |
25802097 |
cgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctttttgtttgtgtgatattg |
25801998 |
T |
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| Q |
107 |
catatgtaatggtaactgttgttatgtatttataattggaaggggcgtgatttggacttgtgctggtttgtgggtaattaggtaatttgaaagtg |
201 |
Q |
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| T |
25801997 |
catatgtaatggtaactgttgttatgtatttataattggaaggggcatgatttggacttgtgctggtttgagggtaattaggtaatttgaaagtg |
25801903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 25816190 - 25816102
Alignment:
| Q |
7 |
cgttgtgctcgaatctgagtttgtgttttgggtggctgaaatgggatatctcactgtattacattgttctgtttcttctctgtttgttt |
95 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||||||| |
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| T |
25816190 |
cgttgtgttcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcgttgtatttcattgttctgtttcttctctatttgttt |
25816102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 112434 - 112617
Alignment:
| Q |
7 |
cgttgtgctcgaatctgagtttgtgttttgggtggctgaaatgggatatctcactgtattacattgttctgtttcttctctgtttgtttgtgtgatattg |
106 |
Q |
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| T |
112434 |
cgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcactgtatttcattgttctg-----------tttgtttgtgtgatattg |
112522 |
T |
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| Q |
107 |
catatgtaatggtaactgttgttatgtatttataattggaaggggcgtgatttggacttgtgctggtttgtgggtaattaggtaatttgaaagtg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
112523 |
catatgtaatggtaactgttgttatgtatttataattggaaggggcgtgatttggacttgtgttggtttgagggtaattaagtaatttgaaagtg |
112617 |
T |
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