View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_332 (Length: 215)

Name: NF9595A_low_332
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_332
NF9595A_low_332
[»] chr4 (12 HSPs)
chr4 (21-138)||(46550706-46550823)
chr4 (31-138)||(17056615-17056722)
chr4 (24-138)||(47541809-47541925)
chr4 (31-138)||(41464802-41464911)
chr4 (31-138)||(52920087-52920197)
chr4 (36-131)||(15827131-15827229)
chr4 (40-138)||(47833504-47833603)
chr4 (30-138)||(36364868-36364972)
chr4 (31-138)||(39503504-39503615)
chr4 (31-138)||(20679841-20679951)
chr4 (43-128)||(46381481-46381568)
chr4 (66-138)||(42969971-42970043)
[»] chr1 (10 HSPs)
chr1 (31-138)||(16253029-16253136)
chr1 (31-138)||(24241478-24241585)
chr1 (31-138)||(41942781-41942888)
chr1 (31-138)||(21356794-21356901)
chr1 (31-138)||(34773420-34773528)
chr1 (31-138)||(39744169-39744276)
chr1 (25-129)||(38746028-38746133)
chr1 (31-138)||(2344969-2345077)
chr1 (31-109)||(48503922-48504000)
chr1 (31-133)||(7101359-7101464)
[»] chr3 (9 HSPs)
chr3 (31-138)||(44880254-44880361)
chr3 (27-138)||(1994850-1994961)
chr3 (31-138)||(22220210-22220318)
chr3 (32-138)||(2008400-2008508)
chr3 (26-138)||(22831174-22831286)
chr3 (31-138)||(39056875-39056981)
chr3 (31-107)||(26466362-26466438)
chr3 (51-138)||(28297695-28297782)
chr3 (31-88)||(45805583-45805640)
[»] chr7 (8 HSPs)
chr7 (27-138)||(8541427-8541539)
chr7 (31-138)||(34998528-34998637)
chr7 (31-138)||(10544991-10545100)
chr7 (31-110)||(39187986-39188065)
chr7 (31-138)||(45627414-45627524)
chr7 (36-88)||(32676800-32676852)
chr7 (21-77)||(15878797-15878853)
chr7 (79-138)||(40076693-40076753)
[»] chr8 (11 HSPs)
chr8 (27-138)||(42056676-42056787)
chr8 (19-138)||(30208187-30208307)
chr8 (27-126)||(39402038-39402140)
chr8 (26-138)||(5594779-5594891)
chr8 (32-138)||(1162117-1162222)
chr8 (31-138)||(40719895-40720005)
chr8 (26-138)||(35179155-35179268)
chr8 (28-138)||(31333162-31333273)
chr8 (49-138)||(42921385-42921474)
chr8 (75-138)||(30362018-30362082)
chr8 (31-131)||(36132676-36132776)
[»] chr5 (12 HSPs)
chr5 (31-138)||(33758794-33758901)
chr5 (50-132)||(23151436-23151518)
chr5 (26-138)||(2976446-2976556)
chr5 (40-138)||(34849451-34849550)
chr5 (41-138)||(30319817-30319915)
chr5 (31-138)||(20524604-20524711)
chr5 (31-138)||(10719746-10719854)
chr5 (51-138)||(37872201-37872291)
chr5 (28-68)||(37872302-37872342)
chr5 (24-136)||(8026460-8026577)
chr5 (39-138)||(3454259-3454358)
chr5 (80-138)||(42285218-42285277)
[»] chr2 (10 HSPs)
chr2 (31-138)||(3870024-3870135)
chr2 (31-138)||(11028779-11028887)
chr2 (31-124)||(36400857-36400952)
chr2 (25-138)||(28734070-28734183)
chr2 (31-138)||(37721449-37721557)
chr2 (31-138)||(38879517-38879625)
chr2 (31-138)||(3647418-3647526)
chr2 (32-138)||(30706149-30706258)
chr2 (31-138)||(6512079-6512191)
chr2 (77-138)||(3949317-3949378)
[»] scaffold0095 (1 HSPs)
scaffold0095 (27-126)||(35362-35464)
[»] chr6 (3 HSPs)
chr6 (31-138)||(2141240-2141348)
chr6 (26-138)||(7080148-7080262)
chr6 (31-125)||(25336928-25337023)
[»] scaffold0288 (1 HSPs)
scaffold0288 (31-110)||(18084-18163)
[»] scaffold0009 (1 HSPs)
scaffold0009 (23-110)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (31-138)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 46550823 - 46550706
Alignment:
Q  21 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatc 120  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46550823 aataatgaaatattcttccatggtcacaagaccaaatcaataatgtttaaacacatacataaaaagattctcctctaaatattcaatcatcatttttatc 46550724  T
Q  121 aatttcctctttattatt 138  Q
    ||||| ||||||||||||    
T  46550723 aattttctctttattatt 46550706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 17056615 - 17056722
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata-aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 129  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||  ||||||| ||||||  |||||||||||||||||    
T  17056615 tattcttccatggtcacaagaccaaatcaatagtgtttgaatacacacatataaaaaattgtccttaaaatatttaatcat-ttttttatcaatttcctc 17056713  T
Q  130 tttattatt 138  Q
    |||||||||    
T  17056714 tttattatt 17056722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 47541925 - 47541809
Alignment:
Q  24 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatca 121  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||| | |||||||  |||||||||| ||||| ||||||||||||||| |||||||||    
T  47541925 aaggagatattctttcatgatcacaagatcaaatcaataatatttggacacacacacataaaaagattttcctcaaaatattcaatcatcttttttatca 47541826  T
Q  122 atttcctctttattatt 138  Q
    |||||||  ||||||||    
T  47541825 atttccttcttattatt 47541809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 41464911 - 41464802
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 128  Q
    ||||||| ||||||||||||| ||||||||||||  || ||  ||||||||||||||||||||| || ||||| ||||||||| |||||||||||||| |    
T  41464911 tattctttcatggtcacaagatcaaatcaataatacttaaacatacacacataaaaagattctcttcaaaatactcaatcatcttttttatcaatttctt 41464812  T
Q  129 ctttattatt 138  Q
    ||||||||||    
T  41464811 ctttattatt 41464802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 52920197 - 52920087
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcattttt-atcaatttcc 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | |  ||||||||||  | |  ||||||||||||||  ||||| |||||||| |    
T  52920197 tattcttccatggtcacaagaccaaatcaataatgtttaaatacatataaataaaaagatttacttaaaaatattcaatcatttttttttatcaattttc 52920098  T
Q  128 tctttattatt 138  Q
    |||||||||||    
T  52920097 tctttattatt 52920087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 15827229 - 15827131
Alignment:
Q  36 ttccatggtcacaagaccaaatcaataatgtttgaataca--cacataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctt 131  Q
    |||||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||  || ||||||||||| ||  ||||| |||||||| |||||    
T  15827229 ttccatggtcacaagaccgaatcaataatatttgaatacacacacataaaaagattcttgtcaaaatattcaattattttttttcatcaattttctctt 15827131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 47833504 - 47833603
Alignment:
Q  40 atggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattat 137  Q
    |||||| |||||||||||| ||| || ||| |  ||||||||||||||||   ||||| |||||||||||||| | ||||||||||||||||||||||||    
T  47833504 atggtcgcaagaccaaatctatagtggttggacatacacacataaaaagaccatcctcaaaatattcaatcatta-ttttatcaatttcctctttattat 47833602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 36364972 - 36364868
Alignment:
Q  30 atattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 129  Q
    ||||| || ||||||| ||||||||||||||||||||||| | ||||| ||||||| ||  ||||  ||||||    |||| |||||||||||||| |||    
T  36364972 atattgttgcatggtcgcaagaccaaatcaataatgtttggacacacatataaaaatatggtccttaaaatat----tcattatttttatcaattttctc 36364877  T
Q  130 tttattatt 138  Q
    |||| ||||    
T  36364876 tttactatt 36364868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 39503615 - 39503504
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaa--tcatcatttttatcaatttc 126  Q
    |||||||| ||||||||||||| ||||||||| |||||||| ||  ||||||||||||||  || |  ||||||| ||  |  |  ||||||||||||||    
T  39503615 tattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataaaaagatgatctttaaaatatttaatttttttttttttatcaatttc 39503516  T
Q  127 ctctttattatt 138  Q
    ||||||||||||    
T  39503515 ctctttattatt 39503504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 20679951 - 20679841
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata---aaaagattctcctctaaatattcaatcatcatttttatcaatttcc 127  Q
    ||||||| ||||||| ||||| |||||||||| |||||| | ||||||| |   |||| ||  || |  ||||||||||| ||  |||||||||||||||    
T  20679951 tattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacataaaaaaaatggtctttaaaatattcaattattttttttatcaatttcc 20679852  T
Q  128 tctttattatt 138  Q
    |||||||||||    
T  20679851 tctttattatt 20679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 46381481 - 46381568
Alignment:
Q  43 gtcacaagaccaaatcaataatgtttgaatacaca--cataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 128  Q
    ||||||||||||||| |||| |||||||  |||||  |||||| ||||| ||||  ||| ||||||||||  ||||||||||||||||    
T  46381481 gtcacaagaccaaataaatagtgtttgagcacacatacataaagagattatcctaaaaacattcaatcattttttttatcaatttcct 46381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 42969971 - 42970043
Alignment:
Q  66 tttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 138  Q
    |||||| ||||  ||||||||||| ||||  |||||||||||| |  |||||||||||||  |||||||||||    
T  42969971 tttgaacacacgtataaaaagattatccttaaaatattcaatctttttttttatcaattttatctttattatt 42970043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 16253029 - 16253136
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  16253029 tattcttccatgttcacaagaccaaatcaataatgtttggagacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 16253128  T
Q  131 ttattatt 138  Q
    ||||||||    
T  16253129 ttattatt 16253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 24241478 - 24241585
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  24241478 tattcttccatggtcacatgaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 24241577  T
Q  131 ttattatt 138  Q
    ||||||||    
T  24241578 ttattatt 24241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 41942781 - 41942888
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||     
T  41942781 tattctttcatggtcacaagaccaaatcaataatgtttggacacatacataaaaagattctcttcgaaatattcaatcatcatttttatcaatttcctcc 41942880  T
Q  131 ttattatt 138  Q
    ||||||||    
T  41942881 ttattatt 41942888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 21356794 - 21356901
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||| ||||||||||||| |||     
T  21356794 tattcttttatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattctcttcaaaatattcaatcatcttttttatcaattttctca 21356893  T
Q  131 ttattatt 138  Q
    ||||||||    
T  21356894 ttattatt 21356901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 34773528 - 34773420
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 128  Q
    |||||||||||| |||||||||||| ||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  34773528 tattcttccatgatcacaagaccaactcaataatgtttgcacatacacacataaaaagattctcctcaaaatattcaatcatattttttattaatttcct 34773429  T
Q  129 ctttattatt 138  Q
     |||||||||    
T  34773428 -tttattatt 34773420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 39744276 - 39744169
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||  |||| ||||||||  ||||||||| |||||||     
T  39744276 tattcttctatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattcttctcagaatagtcaatcattttttttatcattttcctcc 39744177  T
Q  131 ttattatt 138  Q
    ||||||||    
T  39744176 ttattatt 39744169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 38746133 - 38746028
Alignment:
Q  25 aggagatattcttccatggtcacaagaccaaatcaataatgtttga-atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaat 123  Q
    |||||| |||||||||| |||||||||||||||||||||| || || | |||| |||||| ||||||||||| ||||||||||||||| || || |||||    
T  38746133 aggagacattcttccatcgtcacaagaccaaatcaataattttggacacacacccataaatagattctcctcaaaatattcaatcatctttgttttcaat 38746034  T
Q  124 ttcctc 129  Q
    ||||||    
T  38746033 ttcctc 38746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 2344969 - 2345077
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 128  Q
    ||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| ||| || |  ||| ||||||||||| ||||||||||||||||    
T  2344969 tattcttccttggtcacaagaccaaatcaataatgtttggataagcacacataaaaa-attttctttaaaaaattcaatcatcttttttatcaatttcct 2345067  T
Q  129 ctttattatt 138  Q
    | || |||||    
T  2345068 ccttcttatt 2345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 48503922 - 48504000
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca 109  Q
    |||||||||||| ||| ||||||||||||||||| |||| | ||||| |||||| ||||||| || ||||| |||||||    
T  48503922 tattcttccatgttcataagaccaaatcaataatatttggacacacatataaaaggattctcatcaaaatactcaatca 48504000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 7101464 - 7101359
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttga----atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 126  Q
    |||||| ||||| ||| ||||||||||||||| |||| ||    | ||||||||||||||||  ||||  ||||||||||||||   |||||||||||||    
T  7101464 tattctcccatgatcataagaccaaatcaatagtgttggaacatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 7101366  T
Q  127 ctcttta 133  Q
    |||||||    
T  7101365 ctcttta 7101359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 44880254 - 44880361
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||     
T  44880254 tattctttcatggtcacaagaccaaatcaataatgtttgaacacacacataaaacgattctcctcaaaatattcagtcatcttttttatcaatttcctcc 44880353  T
Q  131 ttattatt 138  Q
    ||||||||    
T  44880354 ttattatt 44880361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 1994961 - 1994850
Alignment:
Q  27 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 126  Q
    |||||||||| | |||||||||||||||||||||||||||||| | | ||||| ||||||||||||||  ||||||||||||||| |||||||||||| |    
T  1994961 gagatattctactatggtcacaagaccaaatcaataatgtttggacaaacacacaaaaagattctcctgaaaatattcaatcatcttttttatcaattac 1994862  T
Q  127 ctctttattatt 138  Q
    ||||||||||||    
T  1994861 ctctttattatt 1994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 22220210 - 22220318
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 129  Q
    |||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||  |||||||||||||||||    
T  22220210 tattcttccatggtcaaaagatcaaatcaataatgtttgtacacacacataaaaagattcttctcaaaatattcaatcatctttttttatcaatttcctc 22220309  T
Q  130 tttattatt 138  Q
     ||||||||    
T  22220310 cttattatt 22220318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 2008400 - 2008508
Alignment:
Q  32 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 129  Q
    ||||||||||| ||||||||||||||||||||| |||| | |||||||||  |||||||||||||| ||||||||||||||| ||||||||||||| |||    
T  2008400 attcttccatgatcacaagaccaaatcaataatatttggacacacacatataaaaagattctcctcaaaatattcaatcatcttttttatcaattttctc 2008499  T
Q  130 tttattatt 138  Q
     ||||||||    
T  2008500 cttattatt 2008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 22831286 - 22831174
Alignment:
Q  26 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 125  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  22831286 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 22831187  T
Q  126 cctctttattatt 138  Q
    |||| ||||||||    
T  22831186 cctccttattatt 22831174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 39056981 - 39056875
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    |||||||||||| || |||||||||||| |||||||||| | ||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| |||     
T  39056981 tattcttccatgatcgcaagaccaaatctataatgtttggacacacacataaaaagattttcctcaaaatattcaatcatc-tttttatcgattttctcc 39056883  T
Q  131 ttattatt 138  Q
    ||| ||||    
T  39056882 ttaatatt 39056875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 26466438 - 26466362
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaat 107  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||| | |||||||||||||  |  |||||||||||    
T  26466438 tattcttccatggtcacaagatcaaattaataatgtttgaacacatatataaaaagattctttttaaaatattcaat 26466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 28297695 - 28297782
Alignment:
Q  51 accaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 138  Q
    ||||||||||||| ||||| | | | | ||||||||||||||||  | |||||| |||||   |||||||||||||||||||||||||    
T  28297695 accaaatcaataaagtttggacatatatataaaaagattctccttaacatattcgatcatttcttttatcaatttcctctttattatt 28297782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 45805640 - 45805583
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 88  Q
    |||||||||||| | |||||| |||||||||| |||||| | ||||||||||||||||    
T  45805640 tattcttccatgattacaagatcaaatcaatagtgtttgcacacacacataaaaagat 45805583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 8541427 - 8541539
Alignment:
Q  27 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatca-tttttatcaattt 125  Q
    |||||||||||  |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | |||||||||||||    
T  8541427 gagatattcttttatggtcacaagaccaaatcaataatgtttgaacacacacgtaaaaagattctcctcaaaatattcaatcattattttttatcaattt 8541526  T
Q  126 cctctttattatt 138  Q
    |||| ||||||||    
T  8541527 cctccttattatt 8541539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 34998528 - 34998637
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcct 128  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||||||||||| |||||||||||||| |||||||||||||| ||    
T  34998528 tattcttccatggtcacaagaccaaatcaataatgtttggacacacacatataaaaagattctcctcaaaatattcaatcattatttttatcaattttct 34998627  T
Q  129 ctttattatt 138  Q
    | ||||||||    
T  34998628 ccttattatt 34998637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 10544991 - 10545100
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatt--tttatcaatttcct 128  Q
    |||||||||| | |||||||||| |||||||| | |||| | ||||||||||||||||| |  |  ||||||||||||||  ||  ||||||||||||||    
T  10544991 tattcttccacgatcacaagaccgaatcaatagtatttggagacacacataaaaagattatttttaaaatattcaatcattttttatttatcaatttcct 10545090  T
Q  129 ctttattatt 138  Q
    ||||||||||    
T  10545091 ctttattatt 10545100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 39188065 - 39187986
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 110  Q
    |||||||||||||||| ||||||||||||||| | |||| | |||| |||||||||||  ||||  ||||||||||||||    
T  39188065 tattcttccatggtcagaagaccaaatcaatagtatttggacacacgcataaaaagatggtccttaaaatattcaatcat 39187986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 45627524 - 45627414
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatg-tttga-atacacacat-aaaaagattctcctctaaatattcaatcatcatttttatcaatttcc 127  Q
    |||||||||||||||||| ||||||||||||| || ||||| | |||||||| ||||| ||| ||||  ||||||| ||||||  |||||||||||||||    
T  45627524 tattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacataaaaaaaattgtccttaaaatatttaatcattttttttatcaatttcc 45627425  T
Q  128 tctttattatt 138  Q
    | | |||||||    
T  45627424 tttatattatt 45627414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 32676800 - 32676852
Alignment:
Q  36 ttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 88  Q
    ||||||||||||||||||||||||||| |||||| |||||||  |||||||||    
T  32676800 ttccatggtcacaagaccaaatcaatagtgtttggatacacatgtaaaaagat 32676852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 15878853 - 15878797
Alignment:
Q  21 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacaca 77  Q
    ||||| |||||||||||| || ||||||||||||||||||||  ||||| |||||||    
T  15878853 aataaagagatattcttctattgtcacaagaccaaatcaatagcgtttggatacaca 15878797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 40076753 - 40076693
Alignment:
Q  79 ataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctttattatt 138  Q
    |||||||||||||  |  ||||||||||||||| ||||| |||||||||||| ||||||||    
T  40076753 ataaaaagattcttttaaaaatattcaatcatctttttttatcaatttcctccttattatt 40076693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 42056676 - 42056787
Alignment:
Q  27 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |  ||||||||||||||| |||||||||||||     
T  42056676 gagatattcttccatggtcacaagaccaaatcaataatgtttggacacaaacataaaaagattctctttaaaatattcaatcatcttttttatcaatttt 42056775  T
Q  127 ctctttattatt 138  Q
    ||| ||||||||    
T  42056776 ctccttattatt 42056787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 30208187 - 30208307
Alignment:
Q  19 agaataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttt 116  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||| | ||  | ||||||||||||||||||| ||||||||||||||| ||||    
T  30208187 agaatatggaggtattcttccatggtcataagaccaaatcaataatgtttggacacatatacataaaaagattctcctc-aaatattcaatcatcttttt 30208285  T
Q  117 tatcaatttcctctttattatt 138  Q
    ||||||||||||| ||||||||    
T  30208286 tatcaatttcctccttattatt 30208307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 39402140 - 39402038
Alignment:
Q  27 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 123  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  39402140 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 39402041  T
Q  124 ttc 126  Q
    |||    
T  39402040 ttc 39402038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 5594779 - 5594891
Alignment:
Q  26 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 125  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  5594779 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 5594878  T
Q  126 cctctttattatt 138  Q
    |||| ||||||||    
T  5594879 cctccttattatt 5594891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 1162222 - 1162117
Alignment:
Q  32 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctt 131  Q
    |||| |||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||||||||  || || ||||||||||||||||    
T  1162222 attcgtccatgatcacaagaccaaatcagtaatatttgaacacacacataaaaggattctcctcaaaatattcaat-gtctttcttatcaatttcctctt 1162124  T
Q  132 tattatt 138  Q
    |||||||    
T  1162123 tattatt 1162117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 40720005 - 40719895
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcc 127  Q
    |||||||||||||||| ||||  |||| ||||||||||| | |||||||  |||||||||||||||| |||||||||||||||  |||||||||||||||    
T  40720005 tattcttccatggtcaaaagattaaattaataatgtttggacacacacacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttcc 40719906  T
Q  128 tctttattatt 138  Q
    || ||||||||    
T  40719905 tccttattatt 40719895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 35179155 - 35179268
Alignment:
Q  26 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatt 124  Q
    |||| ||||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||||| ||| ||||||||||| | |  ||||||||||||    
T  35179155 ggaggtattctttcatggtcataagaccaaatcaataatgtttggacacacatataaaaagattcttctcaaaatattcaataatttttttttatcaatt 35179254  T
Q  125 tcctctttattatt 138  Q
    ||||  ||||||||    
T  35179255 tccttcttattatt 35179268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 31333273 - 31333162
Alignment:
Q  28 agatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatcaattt 125  Q
    |||||||||||||| |||||||||||||||||| ||||||||  ||||||||  |||||||||| | ||  ||||||||||||||| ||||||||| |||    
T  31333273 agatattcttccatagtcacaagaccaaatcaa-aatgtttggttacacacacataaaaagattttacttaaaatattcaatcatcttttttatcagttt 31333175  T
Q  126 cctctttattatt 138  Q
     ||| ||||||||    
T  31333174 tctccttattatt 31333162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 42921385 - 42921474
Alignment:
Q  49 agaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 138  Q
    ||||||||| ||||||||||||| ||| | ||||||||||||| ||| ||||| ||||||||| |||||||||||||| || ||||||||    
T  42921385 agaccaaattaataatgtttgaacacaaatataaaaagattcttctcaaaataatcaatcatcttttttatcaatttcatccttattatt 42921474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 30362082 - 30362018
Alignment:
Q  75 acacataaaaagattctcctctaaatattcaatcatca-tttttatcaatttcctctttattatt 138  Q
    ||||||||||| ||||||||| ||||||||||| || | |||||||||||||| || ||||||||    
T  30362082 acacataaaaaaattctcctcaaaatattcaattattattttttatcaatttcgtccttattatt 30362018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 36132676 - 36132776
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    |||||||| || |||||||||| |||| |||| | |||| ||||||||||||||||||  |  |  ||||||| ||||||  ||||||| ||||||||||    
T  36132676 tattcttctatagtcacaagactaaattaatagtatttggatacacacataaaaagatggtttttaaaatatttaatcattttttttattaatttcctct 36132775  T
Q  131 t 131  Q
    |    
T  36132776 t 36132776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 33758794 - 33758901
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    ||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |    
T  33758794 tattcttccatggtcacaagatcaaatcaatactgtttggacacacacataaaaagattctcctcaaactattcaatcatcttttttatcaatttccttt 33758893  T
Q  131 ttattatt 138  Q
    ||||||||    
T  33758894 ttattatt 33758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 23151518 - 23151436
Alignment:
Q  50 gaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctcttt 132  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  23151518 gaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcatttttatcaatttcttcttt 23151436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 2976556 - 2976446
Alignment:
Q  26 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 125  Q
    |||| |||||||||||||||| ||||||||||||||| |||||| |  |||||||||||||||  ||||  ||||||||||||||  |||||||||||||    
T  2976556 ggaggtattcttccatggtcataagaccaaatcaatagtgtttgga--cacacataaaaagatggtccttaaaatattcaatcattttttttatcaattt 2976459  T
Q  126 cctctttattatt 138  Q
    | |||||| ||||    
T  2976458 cttctttaatatt 2976446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 34849451 - 34849550
Alignment:
Q  40 atggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 138  Q
    ||||||| ||||| |||||||||||||||  | ||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| ||| ||||||||    
T  34849451 atggtcataagacgaaatcaataatgtttcgacacacatataaaaagattctcctcaaaatattcaatcatctttttttatcaattttctccttattatt 34849550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 30319817 - 30319915
Alignment:
Q  41 tggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 138  Q
    ||||||||||||||||||||||||||||| |||  | |||||||||| |||||| |  ||||||||||||||| ||||||||||||||||| || |||||    
T  30319817 tggtcacaagaccaaatcaataatgtttggatacgcgcacataaaaa-attctctttaaaatattcaatcatcttttttatcaatttcctccttcttatt 30319915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 20524711 - 20524604
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 130  Q
    |||||||||||| |||||| || ||||||||| |||||| | |||||||| |||||||  |  |  ||||||||||||||  ||||||||||||||||||    
T  20524711 tattcttccatgatcacaaaactaaatcaatactgtttggacacacacatcaaaagatgatgtttaaaatattcaatcattttttttatcaatttcctct 20524612  T
Q  131 ttattatt 138  Q
    ||||||||    
T  20524611 ttattatt 20524604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 10719746 - 10719854
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 129  Q
    |||||||||||||||| |||||||||| |||| |||||| | ||||||||||||| ||  ||||  ||||||||||||| |  ||||||||||||| |||    
T  10719746 tattcttccatggtcataagaccaaattaatagtgtttggacacacacataaaaaaatggtccttaaaatattcaatcatttttttttatcaattttctc 10719845  T
Q  130 tttattatt 138  Q
    |||| ||||    
T  10719846 tttactatt 10719854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 37872291 - 37872201
Alignment:
Q  51 accaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 138  Q
    |||||||||||||| |||| | |||||||  ||||||||||||| || |||||||||||||||  ||||||||||||||||| ||||||||    
T  37872291 accaaatcaataatatttggacacacacacataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattatt 37872201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 37872342 - 37872302
Alignment:
Q  28 agatattcttccatggtcacaagaccaaatcaataatgttt 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872342 agatattcttccatggtcacaagaccaaatcaataatgttt 37872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 8026460 - 8026577
Alignment:
Q  24 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttt---ta 118  Q
    |||||| |||||||| || |||||||||||||||||||| |||||| |   | ||||||||||||||  || |  ||||||||||||||  ||||   ||    
T  8026460 aaggaggtattcttctatagtcacaagaccaaatcaatactgtttggacgcatacacataaaaagatggtctttaaaatattcaatcatttttttttata 8026559  T
Q  119 tcaatttcctctttatta 136  Q
    ||||||||||||||||||    
T  8026560 tcaatttcctctttatta 8026577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 3454259 - 3454358
Alignment:
Q  39 catggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 138  Q
    |||||| |||||| |||||||||||| |||    ||| | ||| ||||||||| ||  ||||||||||||||| |||||||||||||| | |||||||||    
T  3454259 catggttacaagatcaaatcaataatatttagtcacaaatatataaagattcttcttaaaatattcaatcatcttttttatcaatttcttttttattatt 3454358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 42285218 - 42285277
Alignment:
Q  80 taaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctctttattatt 138  Q
    |||||||||||||||| ||||||||||||| |  ||||||||||||||||| ||||||||    
T  42285218 taaaaagattctcctcaaaatattcaatcatttttttttatcaatttcctccttattatt 42285277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 3870024 - 3870135
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca----taaaaagattctcctctaaatattcaatcatcatttttatcaatttc 126  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  3870024 tattcttccatggtcacaagaccaaatcaataatgttttgacacacacagacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 3870123  T
Q  127 ctctttattatt 138  Q
    ||| ||||||||    
T  3870124 ctccttattatt 3870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 11028779 - 11028887
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 129  Q
    ||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||    
T  11028779 tattcttccatcgtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctccttaaaatattcaatcatctttttttatcaatttcctc 11028878  T
Q  130 tttattatt 138  Q
     ||||||||    
T  11028879 cttattatt 11028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 36400857 - 36400952
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatt 124  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaacacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 36400952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 28734183 - 28734070
Alignment:
Q  25 aggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 123  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||| |||||  |||||||||||    
T  28734183 aggaggtattcttccacggtcacaagaccaaatcaataatgtttggacacacacataaaaa-attctcctcaaaatactcactcatctttttttatcaat 28734085  T
Q  124 ttcctctttattatt 138  Q
    ||| |||||||||||    
T  28734084 ttcttctttattatt 28734070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 37721449 - 37721557
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 129  Q
    |||||||||||||||||||||||||||||||||| |||| | || | ||||||||||||||| || ||||||||||||| |  |||||||||||||||||    
T  37721449 tattcttccatggtcacaagaccaaatcaataatatttggacacgcgcataaaaagattctcttcaaaatattcaatcatttttttttatcaatttcctc 37721548  T
Q  130 tttattatt 138  Q
     ||||||||    
T  37721549 cttattatt 37721557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 38879517 - 38879625
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 129  Q
    ||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| |||||||  ||||||||||||| |||    
T  38879517 tattcttccatagtcacaagaccaaattaataatgtttggacacacacataaaaagattctcctcaaaatattaaatcatctttttttatcaattttctc 38879616  T
Q  130 tttattatt 138  Q
     | ||||||    
T  38879617 ctcattatt 38879625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 3647418 - 3647526
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 128  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||| |  ||||||||||||||| ||||||||||||| ||    
T  3647418 tattcttccttggtcacaagaccaaatcaataatgtttgaacacgaacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattttct 3647516  T
Q  129 ctttattatt 138  Q
    | || |||||    
T  3647517 ccttcttatt 3647526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 30706258 - 30706149
Alignment:
Q  32 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-----tcatttttatcaatttc 126  Q
    |||||| |||||||||||||||||||||||| ||||||   ||||||||||||||||  ||||  |||||||||||||     |  ||||||||||||||    
T  30706258 attcttacatggtcacaagaccaaatcaatagtgtttg--gacacacataaaaagatggtccttaaaatattcaatcatttttttttttttatcaatttc 30706161  T
Q  127 ctctttattatt 138  Q
    ||||||| ||||    
T  30706160 ctctttactatt 30706149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 6512191 - 6512079
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttg--aatacacacataaaaagattctcctct-aaatattcaatca---tcatttttatcaatt 124  Q
    |||| ||||||||||||||||||||||||||| ||||||   | ||||||||||||||| |   |||| |||||||||||||   |  ||||||||||||    
T  6512191 tattattccatggtcacaagaccaaatcaatagtgtttggacacacacacataaaaaga-tgaactctaaaatattcaatcatttttttttttatcaatt 6512093  T
Q  125 tcctctttattatt 138  Q
    ||||||||||||||    
T  6512092 tcctctttattatt 6512079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 3949378 - 3949317
Alignment:
Q  77 acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 138  Q
    |||||||||  |||||||| ||||||||||||||  |||||||||||||| | |||||||||    
T  3949378 acataaaaaatttctcctcaaaatattcaatcattttttttatcaatttcttttttattatt 3949317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 35362 - 35464
Alignment:
Q  27 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 123  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  35362 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 35461  T
Q  124 ttc 126  Q
    |||    
T  35462 ttc 35464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 2141348 - 2141240
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 129  Q
    ||||||||||||||||||||| || |||||||| ||||| | || |||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||    
T  2141348 tattcttccatggtcacaagatcatatcaataacgtttggacacccacataaaaagatttttctcaaaatattcaatcatctatttttatcaatttcctc 2141249  T
Q  130 tttattatt 138  Q
     ||||||||    
T  2141248 attattatt 2141240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 7080148 - 7080262
Alignment:
Q  26 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaat 123  Q
    |||| |||||||| ||||||||| |||||||||||||||||||| | ||||  |||||||||||||||| || ||||||||||| ||| |||||||||||    
T  7080148 ggaggtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataaaaagattctcttcaaaatattcaataatcttttttatcaat 7080247  T
Q  124 ttcctctttattatt 138  Q
    ||| |||||| ||||    
T  7080248 ttcgtctttaatatt 7080262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 25337023 - 25336928
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 125  Q
    ||||||||| ||||||||||| ||||||||||||||||| | |  |||||||||||| |||||| |  ||||||||||||||| |||||||||||||    
T  25337023 tattcttccttggtcacaagatcaaatcaataatgtttggacacgcacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattt 25336928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 18163 - 18084
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 110  Q
    |||||||||||||| |||||| | ||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  18163 tattcttccatggttacaagatccaatcaataatgtttgaacacacatagaaaaagattctcctcaaaatattcaatcat 18084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 25680 - 25767
Alignment:
Q  23 taaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 110  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||| | |||||| |||||||||| || || ||||||||||||||    
T  25680 taaggaggtattcttccatgatcacgagaccaaatcaataatgtttggacacacacgtaaaaagattttcatcaaaatattcaatcat 25767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 165 - 57
Alignment:
Q  31 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 128  Q
    |||||||||||| ||||||||||||||||||| |||||| | ||||  ||||||||||||  || |  ||||||||||||||  |||||||||||||| |    
T  165 tattcttccatgatcacaagaccaaatcaatagtgtttggacacacatacataaaaagatagtcttaaaaatattcaatcat-ttttttatcaatttcat 67  T
Q  129 ctttattatt 138  Q
    ||||||||||    
T  66 ctttattatt 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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