View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_334 (Length: 214)

Name: NF9595A_low_334

Description: NF9595A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9595A_low_334

[»] chr1 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 149; E-Value: 7e-79

Query Start/End: Original strand, 1 - 213

Target Start/End: Original strand, 31503323 - 31503534

Alignment:

Q	1	atgaaatgcacaacaatttccacacaacaattttaacctatactcataaatcattcaaatgcacgttatatcgagtcatgaaggagtctgttggatcatt	100	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	31503323	atgaaatacacaacaatttccacacaacaattttaacctatactcataaatcattcaaatgcacgttatattaggtcatgaaggagtccgttggatcatt	31503422	T

Q	101	cacattaggttttgaacaatcacgtaagtgagttagacaccacatcttaacttaaaatcttaaacattagatatactgaacatatcctctcatttatata	200	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31503423	tacattaggtcttgaacaatcatataagtgagttagacaccacatcttaacttaaaatcttaaacattagatatacaaaacatat-ctctcatttatata	31503521	T

Q	201	ttcttcgacatcc	213	Q
		\| \|\|\| \|\|\|\|\|\|
T	31503522	gtgttcaacatcc	31503534	T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 100 - 159

Target Start/End: Original strand, 4481591 - 4481650

Alignment:

Q	100	tcacattaggttttgaacaatcacgtaagtgagttagacaccacatcttaacttaaaatc	159	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	4481591	tcacattagtttttgaaaaatcacataagtgaattaaacatcacatcttaacctaaaatc	4481650	T

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