View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9595A_low_341 (Length: 209)
Name: NF9595A_low_341
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_341 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 43941313 - 43941491
Alignment:
| Q |
25 |
tgaaatttcaccccgttaacaattttagtgatagtcgattctttgttttgaaagatcttaatgttgtgttcctttcaaataatccaagttccaaccaaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43941313 |
tgaaatttcaccccgttaacaattttagtgatagccgattctttgttttgaaagatcttaatgttgtgttcctttcaaataatccaagttccaaccaaat |
43941412 |
T |
|
| Q |
125 |
aatttgaagacagatgcaaatgtcctttcgaaaaaatggttgtcaccaaactgtgtagcatgcatgacaatttcagatg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43941413 |
aatttgaagacagatgcaaatgtcctttcgaaaaaatagttgtcaccaaactgtgtagcatgcatgacaatttcagatg |
43941491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 39435987 - 39436073
Alignment:
| Q |
25 |
tgaaatttcaccccgttaacaattttagtgatagtcgattctttgttttgaaagatcttaatgttgtgttcctttcaaataatccaa |
111 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||| |||| |||||||| |||| || | |||||||||||| |||||||||||| |
|
|
| T |
39435987 |
tgaaatttcaccatgttaacaatttcaatgatagctgattttttgtttttaaagctcctgcagttgtgttccttccaaataatccaa |
39436073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 51839834 - 51839880
Alignment:
| Q |
61 |
gattctttgttttgaaagatcttaatgttgtgttcctttcaaataat |
107 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||||| |||||||| |
|
|
| T |
51839834 |
gattctttgttttgaaacatctgaaagttgtgttccttccaaataat |
51839880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 30687907 - 30687827
Alignment:
| Q |
27 |
aaatttcaccccgttaacaattttagtgatagtcgattctttgttttgaaagatcttaatgttgtgttcctttcaaataat |
107 |
Q |
| |
|
|||||||||| || |||||||| | ||||||| |||||||| |||||||||||| ||| |||| |||||| | |||||| |
|
|
| T |
30687907 |
aaatttcaccttgtcaacaatttcaatgatagttgattctttattttgaaagatcctaaagttgcattccttccgaataat |
30687827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University