View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_343 (Length: 208)

Name: NF9595A_low_343
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_343
NF9595A_low_343
[»] chr8 (1 HSPs)
chr8 (144-208)||(17894922-17894986)
[»] chr3 (2 HSPs)
chr3 (144-208)||(6445066-6445130)
chr3 (144-190)||(37187602-37187648)
[»] chr6 (1 HSPs)
chr6 (144-208)||(4749603-4749667)


Alignment Details
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 17894922 - 17894986
Alignment:
Q  144 aacctaaattatgaacataaaatgtcttttattttatgagaggaagaggtagatgaagatgatga 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  17894922 aacctaaattatgaacacaaaatgtcttttattttatgagaggaagaggtagatggagataatga 17894986  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 6445066 - 6445130
Alignment:
Q  144 aacctaaattatgaacataaaatgtcttttattttatgagaggaagaggtagatgaagatgatga 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  6445066 aacctaaattatgaacacaaaatgtcttttattttatgagaggaagaggtagatggagataatga 6445130  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 37187648 - 37187602
Alignment:
Q  144 aacctaaattatgaacataaaatgtcttttattttatgagaggaaga 190  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||    
T  37187648 aacctaaattatgagcacaaaatgtcttttattttatgagatgaaga 37187602  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 4749667 - 4749603
Alignment:
Q  144 aacctaaattatgaacataaaatgtcttttattttatgagaggaagaggtagatgaagatgatga 208  Q
    ||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||| ||||    
T  4749667 aacctaaattatgaacacaaaatgtcttttttttttttagaggaagaggtagatgaagataatga 4749603  T

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