View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_345 (Length: 208)
Name: NF9595A_low_345
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_345 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 28250309 - 28250132
Alignment:
| Q |
7 |
gacatcagatcaaaacaacgaatccttctacagttaattatcaacctcttcccgtcagagaaagcagcttttccaatcaacttcctttgctgcctcctcc |
106 |
Q |
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| T |
28250309 |
gacatcagatcaaaacaacgaagccttctagagttaattatcaatctcttcccttcggagaaagcagcttttccaatcaacttcctttgctgcctcctcc |
28250210 |
T |
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| Q |
107 |
gttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacg |
184 |
Q |
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| T |
28250209 |
gttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacg |
28250132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 32179845 - 32179733
Alignment:
| Q |
52 |
ctcttcccgtcagagaaagcagcttttccaatcaacttcctttgctgcctcctccgttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaac |
151 |
Q |
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||||| ||||| |||||||| |||||||| ||||||||||| ||||| || |||||||| || ||| |||| |||||||| | || ||||| ||||| |
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| T |
32179845 |
ctctttccgtcggagaaagctgcttttccgatcaacttcctctgctgtcttctccgttgtgctatctacctacgcgcctcaagcgcgtgcaagcgcgaac |
32179746 |
T |
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| Q |
152 |
tcgagaaacgaat |
164 |
Q |
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||||||| ||||| |
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| T |
32179745 |
tcgagaagcgaat |
32179733 |
T |
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