View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_350 (Length: 205)

Name: NF9595A_low_350
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_350
NF9595A_low_350
[»] chr7 (9 HSPs)
chr7 (17-188)||(1595498-1595669)
chr7 (42-150)||(1105427-1105535)
chr7 (17-145)||(1542060-1542188)
chr7 (38-151)||(1603846-1603962)
chr7 (38-147)||(1557990-1558105)
chr7 (29-123)||(3956074-3956168)
chr7 (42-91)||(1551375-1551424)
chr7 (38-139)||(2329174-2329275)
chr7 (38-139)||(2337073-2337174)
[»] scaffold0491 (2 HSPs)
scaffold0491 (38-150)||(1744-1856)
scaffold0491 (42-149)||(6587-6694)
[»] chr8 (4 HSPs)
chr8 (38-150)||(18739865-18739977)
chr8 (38-150)||(18744829-18744941)
chr8 (42-150)||(18749745-18749853)
chr8 (42-149)||(18724094-18724201)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 4e-83; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 1595498 - 1595669
Alignment:
Q  17 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1595498 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgtctattatgtggacatttcatacaa 1595597  T
Q  117 ttgtttggagggtccccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttc 188  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  1595598 ttgtttggagggtccctttccaagttgtcttcagcttaacacaacaacaagggaaaattctgatgtatgttc 1595669  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 1105427 - 1105535
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |    
T  1105427 tttaagcaataataatctcactggaacaattccccaatctctctgtaatgtcgattatgtggacatttcatacaattgtttggagggtcccattccaaat 1105526  T
Q  142 tgtcttcag 150  Q
    |||||||||    
T  1105527 tgtcttcag 1105535  T

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Target: chr7; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 1542188 - 1542060
Alignment:
Q  17 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaa 116  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  1542188 atattgactacatttacaaccttaatttaagcaataataatctcactggaacaattccccaatctctctgtgatgtcaattatgtggacatttcatacaa 1542089  T
Q  117 ttgtttggagggtccccttccaagttgtc 145  Q
    |||||||||||||||| |||||| |||||    
T  1542088 ttgtttggagggtcccattccaaattgtc 1542060  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 1603846 - 1603962
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcc---tattatgtggacatttcatacaattgtttggagggtcccct 134  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||  |   |||||||||||||||||||||||||||||||||| |||| |    
T  1603846 ttaatttaagcaataataatctctctggaacaattccccaatctctctgtaatttctattattatgtggacatttcatacaattgtttggaggatcccat 1603945  T
Q  135 tccaagttgtcttcagc 151  Q
    ||||| |||||||||||    
T  1603946 tccaaattgtcttcagc 1603962  T

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Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 1558105 - 1557990
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaat------gcctattatgtggacatttcatacaattgtttggagggtcc 131  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  1558105 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatttattcaattattatgtggacatttcatacaattgtttggagggtcc 1558006  T
Q  132 ccttccaagttgtctt 147  Q
    | |||||| |||||||    
T  1558005 cattccaaattgtctt 1557990  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 3956168 - 3956074
Alignment:
Q  29 tttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttg 123  Q
    |||||| | |||||||||| ||||||||||||| ||| || || |||||||||||||||||||  | |||| |||||||||| ||||||||||||    
T  3956168 tttacaaacttaatttaagtaataataatctcagtggaacgataccccaatctctctgtaatgttttttatctggacatttcttacaattgtttg 3956074  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 1551424 - 1551375
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatg 91  Q
    ||||||| |||||||||||||||| ||||||||||| ||| | |||||||    
T  1551424 tttaagccataataatctcactggaacaattccccattctatttgtaatg 1551375  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 2329174 - 2329275
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||| ||||||||||| || ||     ||||||||||||| ||||||| | |||||||||||||||| | ||||  |||  ||||||| |||||    
T  2329174 ttaatttaaggaataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatcatttaaagggtcctcttcc 2329273  T
Q  138 aa 139  Q
    ||    
T  2329274 aa 2329275  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 2337073 - 2337174
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||| ||||||||||| || ||     ||||||||||||| ||||||| | |||||||||||||||| | ||||  |||  ||||||| |||||    
T  2337073 ttaatttaaggaataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatcatttaaagggtcctcttcc 2337172  T
Q  138 aa 139  Q
    ||    
T  2337173 aa 2337174  T

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Target: scaffold0491 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 1856 - 1744
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  1856 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 1757  T
Q  138 aagttgtcttcag 150  Q
    || ||||||||||    
T  1756 aaattgtcttcag 1744  T

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Target: scaffold0491; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 6694 - 6587
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 141  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| | |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  6694 tttaagaaataataatctcactggaacaattccccaatctctctgtaaagtcatttatgtggacatttcatacaattgtttgaagggtcccattccaaat 6595  T
Q  142 tgtcttca 149  Q
    ||||||||    
T  6594 tgtcttca 6587  T

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Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 18739977 - 18739865
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  18739977 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 18739878  T
Q  138 aagttgtcttcag 150  Q
    || ||||||||||    
T  18739877 aaattgtcttcag 18739865  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 18744941 - 18744829
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  18744941 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 18744842  T
Q  138 aagttgtcttcag 150  Q
    || ||||||||||    
T  18744841 aaattgtcttcag 18744829  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 18749853 - 18749745
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 141  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||| |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  18749853 tttaagaaataataatctcactggaacaattccccaatctctctgcaatgtcatttatgtggacatttcatacaattgtttgaagggtcccattccaatt 18749754  T
Q  142 tgtcttcag 150  Q
    |||||||||    
T  18749753 tgtcttcag 18749745  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 18724201 - 18724094
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 141  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| | |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  18724201 tttaagaaataataatctcactggaacaattccccaatctctctgtaaagtcatttatgtggacatttcatacaattgtttgaagggtcccattccaaat 18724102  T
Q  142 tgtcttca 149  Q
    ||||||||    
T  18724101 tgtcttca 18724094  T

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