View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_351 (Length: 204)

Name: NF9595A_low_351
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_351
NF9595A_low_351
[»] chr1 (8 HSPs)
chr1 (1-167)||(17560737-17560903)
chr1 (1-151)||(4366475-4366625)
chr1 (3-130)||(21855384-21855511)
chr1 (10-143)||(39379049-39379182)
chr1 (13-141)||(4570879-4571007)
chr1 (2-130)||(10218926-10219054)
chr1 (66-152)||(4014944-4015030)
chr1 (3-111)||(4016792-4016900)
[»] chr7 (16 HSPs)
chr7 (1-152)||(29874450-29874602)
chr7 (2-143)||(29859395-29859536)
chr7 (1-152)||(29921972-29922123)
chr7 (10-152)||(29867188-29867327)
chr7 (10-152)||(29881205-29881347)
chr7 (30-145)||(29454089-29454204)
chr7 (13-111)||(29445676-29445774)
chr7 (61-152)||(29430980-29431071)
chr7 (61-145)||(14076678-14076762)
chr7 (61-145)||(14386706-14386790)
chr7 (66-145)||(660833-660912)
chr7 (85-153)||(19351047-19351115)
chr7 (60-111)||(29106813-29106864)
chr7 (60-111)||(29899373-29899424)
chr7 (13-122)||(29895418-29895530)
chr7 (85-145)||(18514773-18514833)
[»] chr4 (8 HSPs)
chr4 (10-142)||(3557675-3557807)
chr4 (3-142)||(3565686-3565825)
chr4 (10-152)||(3560937-3561079)
chr4 (61-131)||(53774840-53774910)
chr4 (3-143)||(1686273-1686413)
chr4 (61-145)||(11970968-11971052)
chr4 (69-130)||(53430100-53430161)
chr4 (61-150)||(11981664-11981753)
[»] chr3 (1 HSPs)
chr3 (1-152)||(3625674-3625825)
[»] chr5 (2 HSPs)
chr5 (3-130)||(24330900-24331027)
chr5 (1-129)||(29597554-29597682)
[»] chr2 (1 HSPs)
chr2 (85-152)||(14514924-14514991)
[»] chr6 (3 HSPs)
chr6 (61-132)||(6921349-6921420)
chr6 (66-143)||(6935206-6935283)
chr6 (61-145)||(20770650-20770734)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 17560903 - 17560737
Alignment:
Q  1 aaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaaga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  17560903 aaccaacttttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggttgaaga 17560804  T
Q  101 ttcttggactccattccttagaattagttataacgatcttcaaattgattatagctatgatggttat 167  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17560803 ttcttggacaccattccttataattagttataacgatcttcaaattgattatagctatgatggttat 17560737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 4366625 - 4366475
Alignment:
Q  1 aaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaaga 100  Q
    |||||||  ||||||||||||||||||| |||||||||||||||  ||||||| |||  ||||| ||| |||||||  |||||||||| |||||||||||    
T  4366625 aaccaacagttggtgtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttgaaga 4366526  T
Q  101 ttcttggactccattccttagaattagttataacgatcttcaaattgatta 151  Q
     |||||||||||||| |||| | |||||||  |  |||||||||| |||||    
T  4366525 gtcttggactccatttcttaaagttagttaccagaatcttcaaatagatta 4366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 21855511 - 21855384
Alignment:
Q  3 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 102  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   |||||||||| |||||| ||||||||| |  ||||| ||||||||||||||||||    
T  21855511 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 21855412  T
Q  103 cttggactccattccttagaattagtta 130  Q
    ||||||||| | |||||| | |||||||    
T  21855411 cttggactcaactccttaaagttagtta 21855384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 39379182 - 39379049
Alignment:
Q  10 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 109  Q
    ||||||||||||| ||||||||||||||||||||| ||||||   |||  |||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  39379182 ttggtgtgttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaagagtcttggac 39379083  T
Q  110 tccattccttagaattagttataacgatcttcaa 143  Q
    || ||| |||| ||| |||||| | |||||||||    
T  39379082 tcaatttcttaaaatcagttatcatgatcttcaa 39379049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 4570879 - 4571007
Alignment:
Q  13 gtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactcc 112  Q
    |||||||||| | ||| |||||||||||||||    ||| |||||  ||||| |||||||||||  |||||||||||||||||||||||||||||||||     
T  4570879 gtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactca 4570978  T
Q  113 attccttagaattagttataacgatcttc 141  Q
    ||| |||| |||||||||||  |||||||    
T  4570979 attgcttaaaattagttatagtgatcttc 4571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 10218926 - 10219054
Alignment:
Q  2 accaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagat 101  Q
    |||||||||||||||||||||||  || ||||||||||||| |    |||||||||  ||||| ||| |||||||  |||||||||||||| ||||||||    
T  10218926 accaactattggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaagat 10219025  T
Q  102 tcttggactccattccttagaattagtta 130  Q
    |||||||||| ||| |||| |||||||||    
T  10219026 tcttggactcaattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 4015030 - 4014944
Alignment:
Q  66 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 152  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| |||||||| | |||||||  | ||||||| ||| ||||||    
T  4015030 gttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagttaccatgatcttctaatagattat 4014944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 4016900 - 4016792
Alignment:
Q  3 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 102  Q
    ||||||||| |||||||||||| ||| |||||||||||||||   || | | ||| | ||||   ||| |||||  ||||||||||||| ||||||||||    
T  4016900 ccaactattagtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagatt 4016801  T
Q  103 cttggactc 111  Q
    | |||||||    
T  4016800 cctggactc 4016792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 29874450 - 29874602
Alignment:
Q  1 aaccaactattggtgtgttgggg-gactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 99  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||  |||||  ||||||||||  |||||||||||||||||||||    
T  29874450 aaccaaatataggtgtgttggggcgactgtctttgtttttcttattgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaag 29874549  T
Q  100 attcttggactccattccttagaattagttataacgatcttcaaattgattat 152  Q
    |||||||||||||||| |||| |||||||||| |  |||||||||||||||||    
T  29874550 attcttggactccattacttaaaattagttatcaaaatcttcaaattgattat 29874602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 29859395 - 29859536
Alignment:
Q  2 accaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagat 101  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||  ||||| ||||||||| |  ||||||||||||| |||||||||    
T  29859395 accaactattggtgtgttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagat 29859494  T
Q  102 tcttggactccattccttagaattagttataacgatcttcaa 143  Q
    |||||||| ||||| |||| |||||||||| || ||||||||    
T  29859495 tcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 29922123 - 29921972
Alignment:
Q  1 aaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaaga 100  Q
    |||||||  ||||||||||||||| ||| |||||||||||||||  |||||| ||||  ||||| |||||||||||  ||||||||||||||| ||||||    
T  29922123 aaccaaccgttggtgtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaaga 29922024  T
Q  101 ttcttggactccattccttagaattagttataacgatcttcaaattgattat 152  Q
    ||||||| ||| ||||||||||||||||||| |  |||||| ||| ||||||    
T  29922023 ttcttggtctcaattccttagaattagttatcaaaatcttctaatagattat 29921972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 29867188 - 29867327
Alignment:
Q  10 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 109  Q
    ||||||||||||||||||| |||||||||||||||  |   |||||||  |||||  ||||||||||  |||||||||| ||||||||||||||||||||    
T  29867188 ttggtgtgttgggggactgcctttgtttttcttattct---aaggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggac 29867284  T
Q  110 tccattccttagaattagttataacgatcttcaaattgattat 152  Q
    || ||||||||||||||||||  |  |||||||||||||||||    
T  29867285 tcaattccttagaattagttaccataatcttcaaattgattat 29867327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 29881205 - 29881347
Alignment:
Q  10 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 109  Q
    |||||||||||| |||||| ||||| |||| |||| ||||||||||||  |||||  || | |||||  |||||||||||||||||||||||||||||||    
T  29881205 ttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttggggttgaagattcttggac 29881304  T
Q  110 tccattccttagaattagttataacgatcttcaaattgattat 152  Q
    || ||||||||||||||||||  |   ||||||||||||||||    
T  29881305 tcaattccttagaattagttaccatagtcttcaaattgattat 29881347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 29454204 - 29454089
Alignment:
Q  30 ctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagtt 129  Q
    |||||||||||||||  ||||||||||  |||||| ||||||||||   ||| ||||||||| ||||||||||||||||||| |||| ||| ||||||||    
T  29454204 ctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagtt 29454105  T
Q  130 ataacgatcttcaaat 145  Q
    || | |||||||||||    
T  29454104 atcaagatcttcaaat 29454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 29445774 - 29445676
Alignment:
Q  13 gtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 111  Q
    |||||||||||| ||  ||||||| |||||||  ||||||||||| ||||||  ||||||||||  ||||| |||| ||||||||||| ||||||||||    
T  29445774 gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggactc 29445676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 29431071 - 29430980
Alignment:
Q  61 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 152  Q
    |||| ||||||||||   ||| ||||||||||| | ||||||||||||| | |||||||| |||||||||| | ||||||||||| ||||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaatagattat 29430980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 14076678 - 14076762
Alignment:
Q  61 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 145  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| |||| |||||||||| |  ||||||||||    
T  14076678 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 14386706 - 14386790
Alignment:
Q  61 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 145  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| |||| |||||||||| |  ||||||||||    
T  14386706 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14386790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 660912 - 660833
Alignment:
Q  66 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 145  Q
    |||||||||||  ||||| ||||| | |||||||| |||||||||| |||||||| |||||||||| |  ||||||||||    
T  660912 gttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaat 660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 19351115 - 19351047
Alignment:
Q  85 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattata 153  Q
    ||||||| ||||| || ||||||||||||||||| | |||||||| | | |||||||| ||||||||||    
T  19351115 aatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattata 19351047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 29106813 - 29106864
Alignment:
Q  60 gatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 111  Q
    ||||| ||| |||||||  |||||||||||||||||||||| ||||||||||    
T  29106813 gattttgttgtatggcagatgaagaaatttggggttgaagagtcttggactc 29106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 29899373 - 29899424
Alignment:
Q  60 gatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 111  Q
    ||||| |||||||||||  |||||||||||||||||||||| || |||||||    
T  29899373 gattttgttatatggcagatgaagaaatttggggttgaagagtcctggactc 29899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 29895418 - 29895530
Alignment:
Q  13 gtgtgttgggggactgtctttgtttttcttatcgtt---acaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 109  Q
    |||| ||||| | |||||||||||||||||||  ||   ||||||||| ||| || ||| |||||||  |||||||||||||| | ||||| |||||||     
T  29895418 gtgtcttgggtggctgtctttgtttttcttattcttctgacaaggaaaacgaatttgttttatggcagatgaagaaatttgggatagaagagtcttggag 29895517  T
Q  110 tccattccttaga 122  Q
    || ||| ||||||    
T  29895518 tcaattacttaga 29895530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 18514833 - 18514773
Alignment:
Q  85 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 145  Q
    ||||||| |||||| | |||||||||| |||||||| |||||||||||   ||||||||||    
T  18514833 aatttggagttgaaaactcttggactcaattccttaaaattagttatatgaatcttcaaat 18514773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 3557675 - 3557807
Alignment:
Q  10 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 109  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||| ||||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  3557675 ttggtgtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggac 3557774  T
Q  110 tccattccttagaattagttataacgatcttca 142  Q
    || ||| |||| |||||||||| | ||||||||    
T  3557775 tcaatttcttaaaattagttatcatgatcttca 3557807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 3565686 - 3565825
Alignment:
Q  3 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 102  Q
    |||||| ||||||||||| ||||||| ||||||||||||||| |||| ||| ||| ||||||  ||||||||||  ||||| |||||||||||||||| |    
T  3565686 ccaactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagt 3565785  T
Q  103 cttggactccattccttagaattagttataacgatcttca 142  Q
    ||||||||| ||| |||| |||||||||| | ||||||||    
T  3565786 cttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 3561079 - 3560937
Alignment:
Q  10 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 109  Q
    ||||||| |||||||| || |||||||||||||||  ||||||||||| ||||||  |||| |||||  |||| ||||||||||||||||| ||||||||    
T  3561079 ttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggac 3560980  T
Q  110 tccattccttagaattagttataacgatcttcaaattgattat 152  Q
    || ||| |||| |||||||||| | ||||||||| | ||||||    
T  3560979 tcaatttcttaaaattagttatcatgatcttcaattagattat 3560937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 53774840 - 53774910
Alignment:
Q  61 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttat 131  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| |||||||| ||||||||||    
T  53774840 attttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttat 53774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 1686413 - 1686273
Alignment:
Q  3 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 102  Q
    |||||| ||||||||||||||||||| |||||||||||||||  ||| |||   | | || |  ||||||||||  ||||| ||||||| ||||| || |    
T  1686413 ccaactgttggtgtgttgggggactgcctttgtttttcttattcttataagaggaccaatcttattatatggcagatgaaggaatttggcgttgacgagt 1686314  T
Q  103 cttggactccattccttagaattagttataacgatcttcaa 143  Q
    ||||||||| ||| |||| |  ||||||| | |||||||||    
T  1686313 cttggactcaatttcttaaatatagttattatgatcttcaa 1686273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 11971052 - 11970968
Alignment:
Q  61 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 145  Q
    |||| |||||||||||  ||||| ||||||| || ||||| |||||||||| ||| ||||||||||||||| |  ||||||||||    
T  11971052 attttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttcaaat 11970968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 53430161 - 53430100
Alignment:
Q  69 atatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagtta 130  Q
    ||||||||  ||||||||| |||||  |||||||||||||||| |||||||| |||||||||    
T  53430161 atatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagtta 53430100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 11981753 - 11981664
Alignment:
Q  61 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgatt 150  Q
    |||| |||||||||||  ||||| ||||||| || ||||| || ||||||| ||| |||| ||||||||||    |||||||||||||||    
T  11981753 attttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttatcttaatcttcaaattgatt 11981664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 3625674 - 3625825
Alignment:
Q  1 aaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaaga 100  Q
    |||||| | ||||||||||||||||||| |||||||||||||||  |||||||| || | || |  ||||||||||  ||||||||||||||||||||||    
T  3625674 aaccaaatgttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttgaaga 3625773  T
Q  101 ttcttggactccattccttagaattagttataacgatcttcaaattgattat 152  Q
     |||||||||| ||| |||| |||||||||| |  |||||||| | ||||||    
T  3625774 gtcttggactcaatttcttaaaattagttatcaaaatcttcaattagattat 3625825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 24331027 - 24330900
Alignment:
Q  3 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 102  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   |||||||||| |||||| ||||||||| |  ||||| ||||||||||||||||||    
T  24331027 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 24330928  T
Q  103 cttggactccattccttagaattagtta 130  Q
    ||||||||| | |||||| | |||||||    
T  24330927 cttggactcaactccttaaagttagtta 24330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 29597682 - 29597554
Alignment:
Q  1 aaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaaga 100  Q
    |||||||||||| ||| |||  |||| | |||||||||||| | | || ||||||||   |||| |||||||||||  |||   ||||||| |||||| |    
T  29597682 aaccaactattgctgttttgctggaccgcctttgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaaca 29597583  T
Q  101 ttcttggactccattccttagaattagtt 129  Q
     |||||||||| |||||||| ||||||||    
T  29597582 atcttggactcaattccttaaaattagtt 29597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 14514924 - 14514991
Alignment:
Q  85 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 152  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||||   |||||||||| ||||||    
T  14514924 aatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaatagattat 14514991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 6921420 - 6921349
Alignment:
Q  61 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttata 132  Q
    |||| ||||| |||||  ||||| ||||||| |||||||| |||||||||| |||||||| |||||||||||    
T  6921420 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 6921349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 6935283 - 6935206
Alignment:
Q  66 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaa 143  Q
    ||||| |||||  ||||| ||||||| ||| |||| |||||||||  |||||||| ||||||||||| | ||||||||    
T  6935283 gttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 6935206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 20770650 - 20770734
Alignment:
Q  61 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 145  Q
    |||| |||||||||||  ||||| |||||||  ||||||| || |||| || |||||||| |||||||||| |  ||||||||||    
T  20770650 attttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttcaaat 20770734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University