View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_36 (Length: 389)
Name: NF9595A_low_36
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 17936443 - 17936127
Alignment:
| Q |
7 |
tttggtgttcaatccagaaaaacaagaaggaagagcaacaaaaaggtgggtcatttgatacatggggttcactcatgtgtttgaagactaatgatgaaat |
106 |
Q |
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| T |
17936443 |
tttggagttcaatccagaaaaacaagaaggaagagcaacaaaaaggtgggtcatttgatacatggggttcactcatgtgtttgaagactaatgatgaaat |
17936344 |
T |
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| Q |
107 |
ctccaaatctcttccaccttacattcaccctcttgctaaaaggacaaaaagctctttgtctaggaagagtcttgaaatttgtactgagagtctcggatcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17936343 |
ctccaaatctcttccaccttacattcaccctcttgctaaaaggacaaaaagctctttgtctaggaagagtcttgaaatttgtactgagagtctcggatcc |
17936244 |
T |
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| Q |
207 |
gagactggttcagatggcccggtgtcctcttatcctccatctgaaagtctcggatccgatacaggttctgatggactgttgtcctctgatcctccgtcgg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17936243 |
gagactggttcagatggcccggtgtcctcttatcctccatctgaaagtctcggatccgatacaggttctgatggactgttgtcctctgatcctccgtcag |
17936144 |
T |
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| Q |
307 |
agacagaggatactgag |
323 |
Q |
| |
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||||||||||||||||| |
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| T |
17936143 |
agacagaggatactgag |
17936127 |
T |
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