View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9595A_low_4 (Length: 601)
Name: NF9595A_low_4
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_4 |
 | |
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| [»] scaffold0132 (1 HSPs) |
| | |
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| [»] scaffold0211 (1 HSPs) |
| | |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0387 (1 HSPs) |
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| [»] scaffold0738 (1 HSPs) |
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| [»] scaffold0547 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 331 - 595
Target Start/End: Complemental strand, 7743993 - 7743725
Alignment:
| Q |
331 |
agagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgaggatccaaatgtcttctttttcacaacttctctacat----gcatgaca |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
7743993 |
agagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgaggatccaaatgtcttctttttcacaacttctctaccttcctgcatgaca |
7743894 |
T |
|
| Q |
427 |
aatacattttgtaaagaaatggagactccaattttcaacgaaattaaacattcaacaataaaaatcatgcattcaacaggacagaaacatttcataccaa |
526 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7743893 |
aatacattttgtaaataaatggagactccaattttcaacgaaattaaacattcaacaataaaaatcatgcattcaacaggacagaaacatttcataccaa |
7743794 |
T |
|
| Q |
527 |
tttgtttgcgagagcttgtaaatctatcctcggaattagtttcacggtaaccttctgccgtacattatc |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7743793 |
tttgtttgcgagagcttgtaaatctatcctcggaattagtttcacggtaaccttctgccgtacattatc |
7743725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 104 - 295
Target Start/End: Complemental strand, 7744172 - 7743985
Alignment:
| Q |
104 |
taagaagcaatactcagaagataatgattttcatagatatgttcagaagcaataaatagagtacaacattttagcaagataattttttacagaagaaact |
203 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7744172 |
taagaagcaatactcagaagataatgattttcatagatatgttcagaagcaataaatagagtacaacattttagcaagataattttttacagaagaaact |
7744073 |
T |
|
| Q |
204 |
aaacaagcaataacaataatagatgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttct |
295 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
7744072 |
aaacaaacaataacaataatagatgtgcaactaag----ggcttgtttagaggctgcttccatcaagaatttcatgttatctgagagcttct |
7743985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 7744241 - 7744197
Alignment:
| Q |
35 |
gagaattcactcagaaggtgagaacaaaaacatttgtaacggagc |
79 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
7744241 |
gagaattcattcagaaggtgagaacaaaaacatttgtaacggagc |
7744197 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 387 - 595
Target Start/End: Complemental strand, 40865468 - 40865255
Alignment:
| Q |
387 |
caaatgtcttctttttcacaacttctctacat----gcatgacaaatacattttgtaaagaaa-tggagactccaattttcaacgaaattaaacattcaa |
481 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||| |
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| T |
40865468 |
caaatgccttctttttcacaacttctctaccttcctgcatgacaaatacattttgtaaagaaaatgtggactcgaattttcaacgaaattaacaattcaa |
40865369 |
T |
|
| Q |
482 |
caataaaaatcatgcattcaacaggacagaaacatttcataccaatttgtttgcgagagcttgtaaatctatcctcggaattagtttcacggtaaccttc |
581 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
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| T |
40865368 |
caatacaaatcatgcattcaacaagacagaaacattccataccaatttgtttgcgagagcctgtaaatctatcctcggaattagtttcactctaaccctc |
40865269 |
T |
|
| Q |
582 |
tgccgtacattatc |
595 |
Q |
| |
|
|||||||||||||| |
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|
| T |
40865268 |
tgccgtacattatc |
40865255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 227 - 382
Target Start/End: Complemental strand, 23991 - 23836
Alignment:
| Q |
227 |
tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc |
326 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||||||| |||||| | ||||| |||||||||| ||| ||||||||||| | |||||| |
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|
| T |
23991 |
tgtgcaactaaggttgggcttgtttagaggctacttccatcaaatatttcacttgttctgatagtttcttcatctcttctgcttgcttagacacaacatc |
23892 |
T |
|
| Q |
327 |
ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag |
382 |
Q |
| |
|
||||||| ||||||||||||| |||| ||| |||| |||||||| || ||||||| |
|
|
| T |
23891 |
ttccagaacttctgtcttctgtttcatcttctgaagttcttcatcttttgcttgag |
23836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 227 - 380
Target Start/End: Complemental strand, 14669 - 14516
Alignment:
| Q |
227 |
tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc |
326 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||||||||| |||||| | ||||| |||||||||| ||| ||||| ||||| | |||||| |
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|
| T |
14669 |
tgtgcaactaaggttgggcttgtttagaggctgcttccatcaaatatttcacttgttctgatagtttcttcatctcttctgcctgcttagacacaacatc |
14570 |
T |
|
| Q |
327 |
ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttg |
380 |
Q |
| |
|
||||||| | ||||||||||| |||| ||| || | |||||||| |||||||| |
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|
| T |
14569 |
ttccagaacctctgtcttctgtttcatcttctgtagttcttcatctttagcttg |
14516 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 226 - 352
Target Start/End: Original strand, 19483827 - 19483953
Alignment:
| Q |
226 |
atgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacat |
325 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| | ||||||| |||| | | ||||| |||||||||||||| ||||||| ||| | | ||||| |
|
|
| T |
19483827 |
atgtgcaactaaggttgggcttgtttagaggctgctgccatcaaatattttacatgttctgatagtttcttcaactcttctgctttcttagaaacaacat |
19483926 |
T |
|
| Q |
326 |
cttccagagcttctgtcttctgcttca |
352 |
Q |
| |
|
|||||||| | ||||||||||| |||| |
|
|
| T |
19483927 |
cttccagaacctctgtcttctgtttca |
19483953 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 382
Target Start/End: Complemental strand, 5559 - 5398
Alignment:
| Q |
221 |
aatagatgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagt |
320 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||| |||||||||| ||| || | ||||| || ||||||| || |||| |||||||| |
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|
| T |
5559 |
aataggtgtgcaactaaggttgggcttgtttagaggctacttccatcaagtattacacttgttctgatagcttcttcatttcttctgtttgctttgacac |
5460 |
T |
|
| Q |
321 |
aacatcttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag |
382 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||| ||| |||| | |||||| |||||||||| |
|
|
| T |
5459 |
aacagcttccagatcttctgtcttctgtttcatcttctgaagtttttcatctttagcttgag |
5398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 382
Target Start/End: Complemental strand, 24813615 - 24813454
Alignment:
| Q |
221 |
aatagatgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagt |
320 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||| |||||||||| ||| || | ||||| || ||||||| || |||| |||||||| |
|
|
| T |
24813615 |
aataggtgtgcaactaaggttgggcttgtttagaggctacttccatcaagtattacacttgttctgatagcttcttcatttcttctgtttgctttgacac |
24813516 |
T |
|
| Q |
321 |
aacatcttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag |
382 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||| ||| |||| | |||||| |||||||||| |
|
|
| T |
24813515 |
aacagcttccagatcttctgtcttctgtttcatcttctgaagtttttcatctttagcttgag |
24813454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 19311846 - 19311790
Alignment:
| Q |
326 |
cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag |
382 |
Q |
| |
|
|||| |||| ||||||||||| |||| ||| |||| |||||||||||||||||||| |
|
|
| T |
19311846 |
cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag |
19311790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 382
Target Start/End: Complemental strand, 22163529 - 22163374
Alignment:
| Q |
227 |
tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc |
326 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||| |||||| | ||||| | | ||||| || |||| |||||| | | |||| | |
|
|
| T |
22163529 |
tgtgcaactaaggtttggcttgtttagaggctacttccatcaaatatttcacttgttctgataatagcttcatgtcttctgtttgcttagaaacaacagc |
22163430 |
T |
|
| Q |
327 |
ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag |
382 |
Q |
| |
|
|||||||| ||||||||||| |||| ||| |||| ||||||||||||||||||| |
|
|
| T |
22163429 |
ttccagagtttctgtcttctttttcatcttctgaagttcttcatccttagcttgag |
22163374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 227 - 382
Target Start/End: Original strand, 23784632 - 23784787
Alignment:
| Q |
227 |
tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc |
326 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| |||||||||| |||||| | ||||| | ||||| || |||| |||||| | | |||| | |
|
|
| T |
23784632 |
tgtgcaactaaggtttggcttgattagaggctacttccatcaagtatttcacttgttctgataacagcttcatgtcttctgtttgcttagaaacaacagc |
23784731 |
T |
|
| Q |
327 |
ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag |
382 |
Q |
| |
|
|||||||| ||||||||||| |||| ||| |||| ||||||||||||||||||| |
|
|
| T |
23784732 |
ttccagagtttctgtcttctttttcatcttctgaagttcttcatccttagcttgag |
23784787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0387 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0387
Description:
Target: scaffold0387; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 227 - 380
Target Start/End: Original strand, 8480 - 8633
Alignment:
| Q |
227 |
tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc |
326 |
Q |
| |
|
||||| ||||||| | ||||||||||| | ||| ||||||||| |||| | | ||||| |||||||||| ||| ||||||||||| | | |||||| |
|
|
| T |
8480 |
tgtgctactaaggttgggcttgtttagtgactgcttccatcaaatattttacttgttctgatagtttcttcatctcttctgcttgcttagaaacaacatc |
8579 |
T |
|
| Q |
327 |
ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttg |
380 |
Q |
| |
|
||||||| | ||||||||||| |||| ||| |||| |||||||| || ||||| |
|
|
| T |
8580 |
ttccagaacctctgtcttctgtttcatcttctgaagttcttcatcttttgcttg |
8633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0738 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0738
Description:
Target: scaffold0738; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 3654 - 3613
Alignment:
| Q |
227 |
tgtgcaactaagggttggcttgtttagaggctgtttccatca |
268 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
3654 |
tgtgcaactaaggtttggcttgtttagaggctacttccatca |
3613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0547 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0547
Description:
Target: scaffold0547; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 2093 - 2149
Alignment:
| Q |
326 |
cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag |
382 |
Q |
| |
|
|||| |||| ||||||||||| |||| ||| |||| |||||||||||||||||||| |
|
|
| T |
2093 |
cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag |
2149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 16818204 - 16818148
Alignment:
| Q |
326 |
cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag |
382 |
Q |
| |
|
|||| |||| ||||||||||| |||| ||| |||| |||||||||||||||||||| |
|
|
| T |
16818204 |
cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag |
16818148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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