View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_43 (Length: 375)
Name: NF9595A_low_43
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_43 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 31503175 - 31502812
Alignment:
| Q |
13 |
agacccggtcaaaggtagagtttgatttacaatgatatgagaagctgccttgaatctagattatgtaacacatggctaatgaatttggtagcaaaaggaa |
112 |
Q |
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| T |
31503175 |
agacccggtcaaaggtagagtttgatttacaatgatatgagaagctgccttgaatctagattatgtaacacatggctaatgaatttggtagcaaaaggaa |
31503076 |
T |
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| Q |
113 |
aaaatttaataccaaccgtacctggcttaaaagatacccatccaaacatataaataaaaaatagaaggaacatatacgaagaaccaattatacattgata |
212 |
Q |
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| T |
31503075 |
aaaatttaataccaaccgtacctggcttaaaagttacccatccaaacatataaataaaaaatagaaggaacatatccgatgaaccaattatacattgata |
31502976 |
T |
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| Q |
213 |
catacataaaagaatcagagattccatgtgagt-gggtgaagggaatagcagtgttcaaagtggtccaactactgaaccctagatagaggaatcaaagtc |
311 |
Q |
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| T |
31502975 |
catacataaaagaatcagagattccatgtgagtggggtgaagggaatagcagtgttcaaagtggtccaactactgaaccctagatagaggaatcaaagtc |
31502876 |
T |
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| Q |
312 |
ccatctctccttcatcattgattcagtattcctatacatgtttctgcccaatcaaacctaattt |
375 |
Q |
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| T |
31502875 |
ccatctctccttcatcattgattcagtattcctatacatgtttctgcccaatcaaacctaattt |
31502812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 229 - 375
Target Start/End: Original strand, 29276020 - 29276166
Alignment:
| Q |
229 |
agagattccatgtgagtgggtgaagggaatagcagtgttcaaagtggtccaactactgaaccctagatagaggaatcaaagtcccatctctccttcatca |
328 |
Q |
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| T |
29276020 |
agagattccatgtgagtgggtgaggggaatagcagtgttcaaagtggtccaactgctgaaccatagacagatgaaccaaagtcacatctctccttcatca |
29276119 |
T |
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| Q |
329 |
ttgattcagtattcctatacatgtttctgcccaatcaaacctaattt |
375 |
Q |
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| T |
29276120 |
ttgattcagtattcctatacatgtttctgcccaatcacacccaattt |
29276166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 229 - 375
Target Start/End: Complemental strand, 55858572 - 55858426
Alignment:
| Q |
229 |
agagattccatgtgagtgggtgaagggaatagcagtgttcaaagtggtccaactactgaaccctagatagaggaatcaaagtcccatctctccttcatca |
328 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||| |||| ||| ||| ||||||| |||||||||||||||| |
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| T |
55858572 |
agagattccatgtgagtaggtgaggggaatagcagtgttcaaagtggtccaactgcttaaccatagacagatgaaccaaagtcacatctctccttcatca |
55858473 |
T |
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| Q |
329 |
ttgattcagtattcctatacatgtttctgcccaatcaaacctaattt |
375 |
Q |
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| T |
55858472 |
ttgattcagtattcctatacatgtttctgcccaatcacacccaattt |
55858426 |
T |
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