View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_44 (Length: 374)
Name: NF9595A_low_44
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 33452864 - 33452520
Alignment:
| Q |
22 |
aagtctgcatacaatattatatttgtggttaaatcaaattaatattcaaattctgccaagccgtccttagccgtttgttgcaatcccccctcaccctgat |
121 |
Q |
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| T |
33452864 |
aagtctgcatgcaatattatatttgtggttaaatcaaattaatattcaaattctgccaagccgtccatagccgtttgttgcaatcccccctcaccctgat |
33452765 |
T |
|
| Q |
122 |
attttatgtgtatatatatat----ctgtatttaatctcttatagaaagtaaccaaattaaacaaagaaagagcaatactagtacttcatacatggctct |
217 |
Q |
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| T |
33452764 |
attttatgtgtatatatatatatatctgtatttaatctcttatagaaagtaaccaaattaaacaaagaaagagcaatactagtacttcatacatggctct |
33452665 |
T |
|
| Q |
218 |
ttctcgtgctcttttcctcttttctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggttggactact |
317 |
Q |
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||||||||||||||| |||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33452664 |
ttctcgtgctctttttctctttgctctcattgcttccatcttctcaaccatggccgtggcaaaagattttgtagttggagatgaaaagggttggactact |
33452565 |
T |
|
| Q |
318 |
ttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
362 |
Q |
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| T |
33452564 |
ttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
33452520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 57 - 362
Target Start/End: Complemental strand, 33442571 - 33442270
Alignment:
| Q |
57 |
aaattaatattcaaattctgccaagccgtccttagccgtttgttgcaatcccccctcaccctgatattttatgtgtatatatatatctgtatttaatctc |
156 |
Q |
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| T |
33442571 |
aaattaatattcaaattctgccaagccgtccttagccgtttgtgacaatcccc--ttgccctgaaattatatgtgtatatatac--ccgtattcaatctc |
33442476 |
T |
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| Q |
157 |
ttatagaaagtaaccaaattaaacaaagaaagagcaatactagtacttcatacatggctctttctcgtgctcttttcctcttttctctcattgctactat |
256 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
33442475 |
ttatattaagtaacaaaattaaacaaagaaagagcaatactagtacttcaactatggctctttctcgtgctcttttcctctttgctttcattgctactat |
33442376 |
T |
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| Q |
257 |
cttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtcttt |
356 |
Q |
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| T |
33442375 |
cttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtcttt |
33442276 |
T |
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| Q |
357 |
cgtctc |
362 |
Q |
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|||||| |
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| T |
33442275 |
cgtctc |
33442270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 210 - 362
Target Start/End: Complemental strand, 33400207 - 33400055
Alignment:
| Q |
210 |
atggctctttctcgtgctcttttcctcttttctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggtt |
309 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
33400207 |
atggctctttctcgttctcttttcctctttgctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggagatgaaagtggtt |
33400108 |
T |
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| Q |
310 |
ggactactt-tgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
362 |
Q |
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|||| |||| | ||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
33400107 |
ggac-acttggggttgattaccaagcttgggctgcaaacaaggtctttcgtctc |
33400055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 33397122 - 33397030
Alignment:
| Q |
210 |
atggctctttctcgtgctcttttcctcttttctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaa |
302 |
Q |
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|||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33397122 |
atggctctttctcgtgttctttttctctttgctctcattgctactatcttttcaaccatggctgtggcaaaagattttgtagttggagatgaa |
33397030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 33442633 - 33442587
Alignment:
| Q |
30 |
atacaatattata-tttgtggttaaatcaaattaatattcaaattct |
75 |
Q |
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|||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
33442633 |
atacgatattataatttgtagttaaatcaaattaatattcaaattct |
33442587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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