View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_45 (Length: 372)

Name: NF9595A_low_45
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_45
NF9595A_low_45
[»] chr1 (1 HSPs)
chr1 (19-372)||(36172859-36173216)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 36173216 - 36172859
Alignment:
Q  19 acatcagacacccactaaacgtagttatcttttttggcgtaacattcagtttgataacaataaagtgtacttcagtaattgcagtaataaaacaatagaa 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36173216 acatcagacacccactaaacgtagttatcttttttggcgcaacattcagtttgataacaataaagtgtacttcagtaattccagtaataaaacaatagaa 36173117  T
Q  119 tgtgcttctgtnnnnnnnnnnnnnnnnc----ggagtgcactatttttcactcaggctctagaactagggaggctgaatggaataatcaggacggtttct 214  Q
    |||||||||||                     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  36173116 tgtgcttctgtaaaaaaaaaaaaaaaaaaaatggagtgcactatttttcactcaggctctagaacttgggaggctgaatggaataatcgggacggtttct 36173017  T
Q  215 caatccgccctatccatgctcagttctgtcaaaatacaccatcagaatggtaaacccctgcgtcgttgagggggcagaaggagaaattatcatgaatcag 314  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36173016 caatccgccctatccatgctcagttctgtcaaaatacactatcagaatggtaaacccctgcgtcgttgagggggcagaaggagaaattatcatgaatcag 36172917  T
Q  315 tcatgctgctggctttatttgtacttaactttgttgggcctaatcttctaattataaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36172916 tcatgctgctggctttatttgtacttaactttgttgggcctaatcttctaattataaa 36172859  T

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