View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_46 (Length: 372)
Name: NF9595A_low_46
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 367
Target Start/End: Complemental strand, 42888406 - 42888044
Alignment:
| Q |
6 |
cagagagattaggcttaaaaacaacaatcaatgagtggcgatgagagaggaagaaagaggagattgtgtgagggagaatgaagacggttactgattcagt |
105 |
Q |
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| T |
42888406 |
cagagagattagggttaaaaacaacaatcaatgagtggcgatgagagaggaagaaataggagattgtgtgagggagaatgaagacggttactgattcagt |
42888307 |
T |
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| Q |
106 |
aatttgnnnnnnn-attttattaaataatacttatatttttaatagaaactcaacccttaaattaatttctgtcacatgtcttacatcgtatcttaaatg |
204 |
Q |
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| T |
42888306 |
gatttgttttttttattctattaaataatacttatatttttaatagaaactcaacccttaaattaatttatgtcacatgtcttacttcgtaccttaaatg |
42888207 |
T |
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| Q |
205 |
gattaaatggagttttgtgtaaatgaaacatatctggactccataacctaaccgagttaggtcacaacacataccttaaaattttgaagatctaaattct |
304 |
Q |
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| T |
42888206 |
gattaaatggagtcttgtgtaaatggagcatatctgaactccatagcctaaccgagttaggtcacaacacataccttaaaattttgaagatctaaattct |
42888107 |
T |
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| Q |
305 |
tgtaaaaacattaaatagaaatgtgtaaaagcttaaattctaatatcaataaatccaaaaagt |
367 |
Q |
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| T |
42888106 |
tgtaaaaacattaaatagaaatgtgtaaaagcttaaattctaatatcaataaatccaaaaagt |
42888044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 29380684 - 29380585
Alignment:
| Q |
130 |
taatacttatatttttaatagaaactcaacccttaaattaatttctgtcacatgtcttacat-cgtatcttaaatggattaaatggagttttgtgtaaat |
228 |
Q |
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| T |
29380684 |
taatgcttatattataaataaaaactcagcccttggattaatttctgccatatgtcttacgtccgtaccttaaatggaataaatggagccttgtgtaaat |
29380585 |
T |
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