View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_47 (Length: 372)
Name: NF9595A_low_47
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 364
Target Start/End: Complemental strand, 32265903 - 32265560
Alignment:
| Q |
21 |
ctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgttaatagaaggggggatgacatatttttcct |
120 |
Q |
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| T |
32265903 |
ctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgctaatagaaggggggatgacatatttttcct |
32265804 |
T |
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| Q |
121 |
atgttaaaatggagccaggggaaatttttacatggcccaatcaaacttcctatacagtaatcttgttccaacacaatcaccttcacaagatatgcttcat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265803 |
atgttaaaatggagccaggggaaatttttacatggcccaatcaaacttcctatacagtaatcttgttccaacacaatcaccttcacaagatatgcttcat |
32265704 |
T |
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| Q |
221 |
actggacgtccaaccgaacgacttctttcttctgcgtcgtggtgcaaagttgaggccaaacatctccttgaaagcctgatcaggctcaactgtaccaacc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265703 |
actggacgtccaaccgaacgacttctttcttctgcgtcgtggtgcaaagttgaggccaaacatctccttgaaagcctgatcaggctcaactgtaccaacc |
32265604 |
T |
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| Q |
321 |
agctttgcaacaatggttgcactctctctaacatggttcatatc |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32265603 |
agctttgcaacaatggttgcactctctctaacatggtttatatc |
32265560 |
T |
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