View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_48 (Length: 368)
Name: NF9595A_low_48
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 120 - 367
Target Start/End: Original strand, 34519930 - 34520177
Alignment:
| Q |
120 |
ctatctgtgatccagttcaactgtagttgaaaacctattaaatcataatcttgaggtctcactgattagatcttcggtttgaatttcaaaacattagatt |
219 |
Q |
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| T |
34519930 |
ctatctgtgatccagttcaactgtagttgaaaacctattaaatcataatcttgaggtctcactgattagatcttcggtttgaatttcaaaacattagatt |
34520029 |
T |
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| Q |
220 |
gaataattaccaaggatgattctcagtggcattcctcagctctttgagaggctttggctctctagggtaaacagcaggctccaatatataatgcaacaca |
319 |
Q |
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| T |
34520030 |
gaataattaccaaggatgattctcagtggcattcctcagctctttgagaggctttggctctctagggtaaacagcaggctccaatatataatgcaacaca |
34520129 |
T |
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| Q |
320 |
attgttcatcaatgagtcatcaatgttgaaaatgtttgtatactttgg |
367 |
Q |
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| T |
34520130 |
attgttcatcaatgagtcatcaatgttgaaaatgtttgtatactttgg |
34520177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 151 - 339
Target Start/End: Original strand, 34532215 - 34532408
Alignment:
| Q |
151 |
aacctattaaatcataatcttgaggtctcactgattagatcttcggtttgaatttcaaaacatt-----agattgaataattaccaaggatgattctcag |
245 |
Q |
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| T |
34532215 |
aacctattaaatcataatcttgaagtttcactagttccatattcggtccgaatttcaaaacattgcagaagatagaataattaccaaggatgattctcac |
34532314 |
T |
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| Q |
246 |
tggcattcctcagctctttgagaggctttggctctctagggtaaacagcaggctccaatatataatgcaacacaattgttcatcaatgagtcat |
339 |
Q |
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| T |
34532315 |
tggctttcctcagctctttgagaggctcaggctctctagggtaaacagcagtatccaatatatactgcaacacaattgttaatcaatgagtcat |
34532408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 34519834 - 34519882
Alignment:
| Q |
24 |
acttttagggattaaaaccaatgattcgttaatttcagagactagctaa |
72 |
Q |
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| T |
34519834 |
acttttagggattaaaaccaatgattcgttaatttcagagactagctaa |
34519882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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