View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_49 (Length: 368)
Name: NF9595A_low_49
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_49 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 143 - 292
Target Start/End: Original strand, 31502655 - 31502804
Alignment:
| Q |
143 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgtacttccacattttataagtgcaattccaaaggaaagagcttgaaatatatatggatcatc |
242 |
Q |
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| T |
31502655 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgtacttccacattttataagtgcaattccaaaggaaagagcttgaaatatatatggatcatc |
31502754 |
T |
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| Q |
243 |
acacaagactttatgcggtatagacatgtcccatcttatattgatatatt |
292 |
Q |
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| T |
31502755 |
acacaagactttatacggtgtagacatgtcccatcctatattgatatatt |
31502804 |
T |
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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 292
Target Start/End: Complemental strand, 29276331 - 29276174
Alignment:
| Q |
143 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgtacttccacattttataagtgcaat----------tccaaaggaaagagcttgaaatatat |
232 |
Q |
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| T |
29276331 |
agtaaaaagaagagtaaaatgcacacaaagggtagtgtgtatttgtacatttaataagtgcaatagtatcatattcctaagggaagagcttgaaatatat |
29276232 |
T |
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| Q |
233 |
atggatcatcacacaagactttatgcggtatagacatgtcccatcttatattgatatatt |
292 |
Q |
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| T |
29276231 |
atggatcatcaca--agactttatacggtatagacatgtcccatcttatattgatatatt |
29276174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 55858267 - 55858418
Alignment:
| Q |
149 |
aagaagagtaaaatgcacataaaaggtagtgtgtacttccacattttataagtgcaat----------tccaaaggaaagagcttgaaatatatatggat |
238 |
Q |
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| T |
55858267 |
aagaagagtaaaatgcacacaaagggtagtgtgtatttgtacatttaataagtgcaatagtatcatattcctaaggtaagagcttgaaatatatatggat |
55858366 |
T |
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| Q |
239 |
catcacacaagactttatgcggtatagacatgtcccatcttatattgatatatt |
292 |
Q |
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| T |
55858367 |
catcaca--agactttatacggtatagacatgtcccatcttatattgatatatt |
55858418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 27919 - 27959
Alignment:
| Q |
143 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgta |
183 |
Q |
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| T |
27919 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgta |
27959 |
T |
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