View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_54 (Length: 361)
Name: NF9595A_low_54
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_54 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 26 - 361
Target Start/End: Complemental strand, 5393 - 5058
Alignment:
| Q |
26 |
cgtttcacatcttctggaccgaagaattcaacgttccaagttgtgttgaaaactcctgtgcctcnnnnnnnatcatcatactcctcgcttgcaaagccca |
125 |
Q |
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| T |
5393 |
cgtttcacatcttctggaccgaagaattcaacgttccaagttgttttgaaaactcctgtgcctctttttttatcatcatactcctcgcttgcaaagccca |
5294 |
T |
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| Q |
126 |
aaatgaagtggaattctgagatattggagtttatgatattaattggaaaatcacgtaaactttttgagtatggcttcacaccaatgtattcccgaaagat |
225 |
Q |
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| T |
5293 |
aaatgaagtggaattctgagatattggagttgatgatattaattggaaaatcacgtaaactttttgagtatggcttcacaccaatgtattcccgaaagat |
5194 |
T |
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| Q |
226 |
tttaggcattctcacaattagaaaggagggggagattaatgcaaattaattggcttttgtgggaattaatgatcaaccctgtttcccttttataagacta |
325 |
Q |
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| T |
5193 |
tttaggcattctcacaattagaaaggagggggagattaatgcaaattaattggcttttgtgggaattaatgatcaaccatgtttcccttttataagacta |
5094 |
T |
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| Q |
326 |
tggattcaataaactaaaccaaatcaatctttctgt |
361 |
Q |
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| T |
5093 |
tggattcaataaactaaaccaaatcaatctttctgt |
5058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 101 - 288
Target Start/End: Complemental strand, 15646 - 15459
Alignment:
| Q |
101 |
tcatactcctcgcttgcaaagcccaaaatgaagtggaattctgagatattggagtttatgatattaattggaaaatcacgtaaactttttgagtatggct |
200 |
Q |
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| T |
15646 |
tcatactcctcagtggcaaatcccaaaatgaagtggaattctgagatattggttttgattatttcaactggaaaatcccttaaatttgttgagaatggtt |
15547 |
T |
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| Q |
201 |
tcacaccaatgtattcccgaaagattttaggcattctcacaattagaaaggagggggagattaatgcaaattaattggcttttgtggg |
288 |
Q |
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| T |
15546 |
tcacaccaatgtattccctgaagattttagacattctcacaatttcaaaggagggggagattaatgcaaattaattggcttttatggg |
15459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 101 - 288
Target Start/End: Complemental strand, 25814 - 25627
Alignment:
| Q |
101 |
tcatactcctcgcttgcaaagcccaaaatgaagtggaattctgagatattggagtttatgatattaattggaaaatcacgtaaactttttgagtatggct |
200 |
Q |
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| T |
25814 |
tcatactcctcagtggcaaatcccaaaatgaagtggaattctgagatattggttttgattatttcaactggaaaatcccttaaatttgttgagaatggtt |
25715 |
T |
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| Q |
201 |
tcacaccaatgtattcccgaaagattttaggcattctcacaattagaaaggagggggagattaatgcaaattaattggcttttgtggg |
288 |
Q |
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| T |
25714 |
tcacaccaatgtattccctgaagattttagacattctcacaatttcaaaggagggggagattaatgcaaattaattggcttttatggg |
25627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 101 - 288
Target Start/End: Complemental strand, 35980 - 35793
Alignment:
| Q |
101 |
tcatactcctcgcttgcaaagcccaaaatgaagtggaattctgagatattggagtttatgatattaattggaaaatcacgtaaactttttgagtatggct |
200 |
Q |
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| T |
35980 |
tcatactcctcagtggcaaatcccaaaatgaagtggaattctgagatattggttttgattatttcaactggaaaatcccttaaatttgttgagaatggtt |
35881 |
T |
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| Q |
201 |
tcacaccaatgtattcccgaaagattttaggcattctcacaattagaaaggagggggagattaatgcaaattaattggcttttgtggg |
288 |
Q |
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| T |
35880 |
tcacaccaatgtattccctgaagattttagacattctcacaatttcaaaggagggggagattaatgcaaattaattggcttttatggg |
35793 |
T |
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