View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_55 (Length: 361)
Name: NF9595A_low_55
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 53013051 - 53012860
Alignment:
| Q |
1 |
tcatattactaataacaaaatcttgtaatgattgttacggttgaaaatattgctatctataattttacagtatagcattcactctttatatttgttcata |
100 |
Q |
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| T |
53013051 |
tcatatcactaataacaaaatcttgtaatgattgttacggttgaaaatattgctatctataattttacagtacaacattcactctttatatttgttcata |
53012952 |
T |
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| Q |
101 |
aaacttaactcaaatcgataaatatcgatattgttagtttaaacattttcgtacgaattccaacccgaaaccatgcttttaagaagcaaatg |
192 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53012951 |
aaacttaactcaaaccgataaatatcgatattgttagtttaaacattttcgtacgaattccaacctgaaaccatgcttttaagaagcaaatg |
53012860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 231 - 348
Target Start/End: Complemental strand, 53012828 - 53012711
Alignment:
| Q |
231 |
gtaaatatcaaactaagaatttaatttgtttgtgtaaaacaagttttgtggaaacgttcaattatattatatgtgccacaaatagagatttgaacatgta |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53012828 |
gtaaatatcaaactaagaatttaatttgtttgtgtaaaacaagttttgtgaaaacgttcaattatattatatgtgccacaaatagagatttgaacatgta |
53012729 |
T |
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| Q |
331 |
cacttggtagtgatatat |
348 |
Q |
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|||||||||||||||||| |
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| T |
53012728 |
cacttggtagtgatatat |
53012711 |
T |
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