View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_58 (Length: 356)
Name: NF9595A_low_58
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_58 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 2 - 356
Target Start/End: Original strand, 43702949 - 43703303
Alignment:
| Q |
2 |
ggatgtcgaagaatatgctgcccttctcgattacatcagttctgtaagttccacttagcactcttgtgctcactttttaattctatagagaacaatgaac |
101 |
Q |
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| T |
43702949 |
ggatggcgaagcaaatgctgctcttctcgattacatcagttctgtaagttccacttagcactcttgtgctcactttttaattctatagagaacaatgaac |
43703048 |
T |
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| Q |
102 |
attaacagtgagactcaaataatgaacatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaa |
201 |
Q |
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| T |
43703049 |
attaacagtgagactcaaataatgaacatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaa |
43703148 |
T |
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| Q |
202 |
acatactttatttcactacaaagtttaaacttggttttattcacattacttttatcaccaacatgagttggtccgacttgaaggggctcggatcccttga |
301 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43703149 |
acatactttatttcactacaaagtttaaactttgttttattcacattacttttatcgccaacatgagttggtccgacttgaaggggctcggatcccttga |
43703248 |
T |
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| Q |
302 |
gcaagaggtataggattcataatttagtttttgtgaatcaagcaaattctgttgg |
356 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43703249 |
gcaagaggtataggattcaaaatttagtttttgtgaatcaagcaaattctgttgg |
43703303 |
T |
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