View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_59 (Length: 354)

Name: NF9595A_low_59
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_59
NF9595A_low_59
[»] chr4 (2 HSPs)
chr4 (16-348)||(40821517-40821849)
chr4 (243-348)||(40826201-40826306)
[»] chr7 (9 HSPs)
chr7 (48-348)||(20292021-20292311)
chr7 (228-337)||(20301393-20301502)
chr7 (250-348)||(20064893-20064991)
chr7 (243-348)||(20229247-20229352)
chr7 (243-348)||(20261830-20261935)
chr7 (160-235)||(20092587-20092660)
chr7 (252-348)||(20170431-20170527)
chr7 (252-348)||(20172424-20172520)
chr7 (228-348)||(20296617-20296737)
[»] scaffold0027 (1 HSPs)
scaffold0027 (226-271)||(135558-135603)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 40821849 - 40821517
Alignment:
Q  16 aaaagaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  40821849 aaaagaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgt 40821750  T
Q  116 gattttttagactcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821749 gattttttagactcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg 40821650  T
Q  216 tgtttcagtcgttgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |    
T  40821649 tgtttcagtcgttgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagt 40821550  T
Q  316 acataaaggacaccgaaactcttatctccaaag 348  Q
    ||||||||||||| |||||||||||||||||||    
T  40821549 acataaaggacactgaaactcttatctccaaag 40821517  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 40826306 - 40826201
Alignment:
Q  243 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 342  Q
    |||||| |||| ||| ||| ||||||||   ||||| |||||||||| |||  || |||||||||||| |||| ||| |||||| | ||||||||  |||    
T  40826306 tctgttttgtttattctgtgttgctattccctacaatttagtattgcaatagacaccatcacatcatctcaattcatcaaggaccctgaaactctactct 40826207  T
Q  343 ccaaag 348  Q
    ||||||    
T  40826206 ccaaag 40826201  T

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Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 48 - 348
Target Start/End: Original strand, 20292021 - 20292311
Alignment:
Q  48 agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa 144  Q
    ||||||||| |||||| ||| |||| ||||| |||| |||    |||| |||||  |||||||| |||||||||||||||||||||| |||||   ||||    
T  20292021 agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa 20292116  T
Q  145 tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctc 244  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||      ||||||||||||||    
T  20292117 tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctctc 20292207  T
Q  245 tgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctcc 344  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||| |||||| | |||||||||||||||    
T  20292208 tgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctcc 20292307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 20301393 - 20301502
Alignment:
Q  228 tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca 327  Q
    ||||||||| || ||| |||| |||||||| |||||| |||||||||||  |||||||| |  |||  || ||||||||||||||||| ||| ||||||     
T  20301393 tgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtatcggtatagacaccatcacatcatcccaattcatcaaggacc 20301492  T
Q  328 ccgaaactct 337  Q
    | ||||||||    
T  20301493 ctgaaactct 20301502  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 20064991 - 20064893
Alignment:
Q  250 tgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 348  Q
    |||||||| ||||||  ||||||||||| |||||||| |  |||  || ||||||||||||||||| ||| |||||| | ||||| ||  |||||||||    
T  20064991 tgttcattgtgtttttgtatttgttacatgttagtatcggtatagacaccatcacatcatcccaattcatcaaggaccctgaaacactactctccaaag 20064893  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 20229247 - 20229352
Alignment:
Q  243 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 342  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20229247 tctgttttattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20229346  T
Q  343 ccaaag 348  Q
    ||||||    
T  20229347 ccaaag 20229352  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 20261830 - 20261935
Alignment:
Q  243 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 342  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20261830 tctgttgtattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20261929  T
Q  343 ccaaag 348  Q
    ||||||    
T  20261930 ccaaag 20261935  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
Q  160 aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa 235  Q
    ||||||||||||||||||||| ||||||||| | | | | ||||||| |||||  |||||||||  ||||||||||    
T  20092660 aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa 20092587  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 348
Target Start/End: Complemental strand, 20170527 - 20170431
Alignment:
Q  252 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 348  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20170527 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20170431  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 348
Target Start/End: Complemental strand, 20172520 - 20172424
Alignment:
Q  252 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 348  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20172520 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20172424  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 20296617 - 20296737
Alignment:
Q  228 tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca 327  Q
    ||||||||| || | |||||| | | |||| |||||||| ||||||||||  | ||||||||||||  ||  || ||||| ||||||| ||| ||||||     
T  20296617 tgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggacc 20296716  T
Q  328 ccgaaactcttatctccaaag 348  Q
    | |||||||| ||||| ||||    
T  20296717 ctgaaactctaatctcaaaag 20296737  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 135603 - 135558
Alignment:
Q  226 gttgttcaaatatgctctctgttctgttcattttgttttgctattt 271  Q
    ||||||||||| || |||||||| |||| |||||||||||||||||    
T  135603 gttgttcaaatgtgttctctgttttgttaattttgttttgctattt 135558  T

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