View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_65 (Length: 347)
Name: NF9595A_low_65
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 36903120 - 36902848
Alignment:
| Q |
23 |
gttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaagcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgc |
122 |
Q |
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| T |
36903120 |
gttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaagcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgc |
36903021 |
T |
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| Q |
123 |
tgtcttttataagaccttcatgtgattccttgaagatattttcagctgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggctttt |
222 |
Q |
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| T |
36903020 |
tgtcttttataagaccttcatgtgattccttgaagatattttcagctgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggctttt |
36902921 |
T |
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| Q |
223 |
gatatactgctccgaggtgggnnnnnnngcaaatggatcaacatatacaaacatgttcatttgaaagagattc |
295 |
Q |
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| T |
36902920 |
gatatactgctccgaggtgggaaaaaaagcaaatggatcaacatatacaaacatgttcatttgaaagagattc |
36902848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 36893312 - 36893103
Alignment:
| Q |
26 |
ccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaagcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgt |
125 |
Q |
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| T |
36893312 |
ccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgt |
36893213 |
T |
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| Q |
126 |
cttttataagaccttcatgtgattccttgaagatattttcagctgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgat |
225 |
Q |
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| T |
36893212 |
cttttataagacctttgtgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgat |
36893113 |
T |
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| Q |
226 |
atactgctcc |
235 |
Q |
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| T |
36893112 |
gtactgctcc |
36893103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 36883166 - 36883095
Alignment:
| Q |
169 |
tgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctccgaggt |
240 |
Q |
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||||||||| |||||||||||| | || | ||||||| ||| |||||||||||||||||||||||| |||| |
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| T |
36883166 |
tgttttgcccttgttgttgcttctaaagtagaagtgttgtggtacaaggcttttgatatactgctccaaggt |
36883095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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