View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_72 (Length: 345)
Name: NF9595A_low_72
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 157 - 341
Target Start/End: Complemental strand, 29486634 - 29486455
Alignment:
| Q |
157 |
gacctcactttcatttttatattgaacaatatgtcttttcttttgaaccttacactttttaggtgcaaaaatttaatatgaaaatgaaaatttcctctat |
256 |
Q |
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| T |
29486634 |
gacctcactttcatttttatattgaacaatatgtctttt-----gaaccttacactttttaggtgcaaaaatttaatatgaaaatgaaaatctcctctat |
29486540 |
T |
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| Q |
257 |
catgtgcatagtgtgtgtccacaaatgtttgggaggacaaagttttatttattctcttccttctcatttatggaacttggacgtg |
341 |
Q |
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| T |
29486539 |
catgtgcatagtgtgtgtccacaaatggttgggaggacaaagttttatttattttcttccttctcatttatggaacttggacgtg |
29486455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 29486829 - 29486663
Alignment:
| Q |
1 |
atgaaaacgaaaggtaaatccatggggaccacgaatggtgtaaagaggctaactatacatttgaaagacttaggtagagtcaatgtcttggccctatagt |
100 |
Q |
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| T |
29486829 |
atgaaaacgaaaggtaaatctatggggaccacgaatggtgtaaagaggctaactatacatttgaaagacttaggtagagtcaatgtcttgcccctatagt |
29486730 |
T |
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| Q |
101 |
tacttaaaaataattgcatgccaaataattaatatccatttttaaaaaagactagagacctcactttc |
168 |
Q |
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| T |
29486729 |
tacttaaaaataattgcatgccaaataattaatatccattttta-aaaagactagagacctcactttc |
29486663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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