View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_77 (Length: 338)
Name: NF9595A_low_77
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 72 - 330
Target Start/End: Complemental strand, 44535336 - 44535078
Alignment:
| Q |
72 |
gtgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagca |
171 |
Q |
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| T |
44535336 |
gtgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagca |
44535237 |
T |
|
| Q |
172 |
ctggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaaggagtcctcaactttctttacctcattatgatcatatgataatgaag |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535236 |
ctggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaaggagtcctcaactttctttacctcattatgatcatatgataatgaag |
44535137 |
T |
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| Q |
272 |
ttgatgagtttctcatcttctccctcatgttggtagtaaccttttcctctattttcttg |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535136 |
ttgatgagtttctcatcttctccctcatgttggtagtaaccttttcctctattttcttg |
44535078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 2579856 - 2579963
Alignment:
| Q |
82 |
ccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcactggcattga |
181 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||| |||| || || || | ||| || ||||| ||||||||||||||||| ||||||| |
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| T |
2579856 |
cccctagcaagcattttctcataattctcaatagattgaagcctctgaagcataagctgctgcctaaagttcttaatgaaggcatcagcactagcattga |
2579955 |
T |
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| Q |
182 |
tgtcttct |
189 |
Q |
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| |||||| |
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| T |
2579956 |
tatcttct |
2579963 |
T |
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