View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_79 (Length: 334)

Name: NF9595A_low_79
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_79
NF9595A_low_79
[»] chr2 (25 HSPs)
chr2 (1-328)||(39215567-39215894)
chr2 (1-325)||(39161777-39162104)
chr2 (1-325)||(39207090-39207417)
chr2 (1-130)||(39370043-39370172)
chr2 (10-257)||(39388986-39389236)
chr2 (184-322)||(39192266-39192404)
chr2 (184-322)||(39197946-39198084)
chr2 (1-110)||(39192439-39192548)
chr2 (1-110)||(39198119-39198228)
chr2 (157-257)||(39222934-39223037)
chr2 (188-325)||(39370254-39370394)
chr2 (1-106)||(39468274-39468379)
chr2 (1-130)||(39414761-39414890)
chr2 (1-109)||(39473409-39473517)
chr2 (4-79)||(39137820-39137895)
chr2 (4-106)||(39397852-39397954)
chr2 (1-110)||(39222820-39222929)
chr2 (34-109)||(39459220-39459295)
chr2 (32-110)||(39381510-39381588)
chr2 (184-321)||(39381275-39381412)
chr2 (1-109)||(39421832-39421940)
chr2 (184-229)||(39421688-39421733)
chr2 (184-221)||(39468448-39468485)
chr2 (1-90)||(39494461-39494550)
chr2 (177-221)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (1-106)||(16113234-16113339)
chr6 (184-221)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (4-79)||(19807770-19807845)
chr7 (185-229)||(19807963-19808007)
[»] chr5 (2 HSPs)
chr5 (184-325)||(33561135-33561281)
chr5 (189-229)||(17059602-17059642)


Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 39215567 - 39215894
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215567 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 39215666  T
Q  101 caaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggccaaggaaaaaatatattgaagaaacacaatcgggtaaatgttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39215667 caaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttct 39215766  T
Q  201 tattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttattacccgatctacatagttgtttaaaaatatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39215767 tattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttt 39215866  T
Q  301 taatcatgttaatgttttatgtctttgt 328  Q
    ||||||||||||||||||||||||||||    
T  39215867 taatcatgttaatgttttatgtctttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 39161777 - 39162104
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    ||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||||||||    
T  39161777 aatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagt 39161876  T
Q  101 caaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggccaaggaaaaaatatat---tgaagaaacacaatcgggtaaatgt 197  Q
    |||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || | ||||||||||||||||   ||| |||| | |||| |||||||||    
T  39161877 caaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgt 39161976  T
Q  198 tcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttattacccgatctacatagttgtttaaaaatat 297  Q
    |||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||    || ||||||| || || |||||| |  |    
T  39161977 tcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgt 39162076  T
Q  298 ttttaatcatgttaatgttttatgtctt 325  Q
    ||||| ||||||||||||| ||||||||    
T  39162077 ttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 39207417 - 39207090
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    ||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||||||||    
T  39207417 aatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagt 39207318  T
Q  101 caaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggccaaggaaaaaatatat---tgaagaaacacaatcgggtaaatgt 197  Q
    |||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || | ||||||||||||||||   ||| |||| | |||| |||||||||    
T  39207317 caaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgt 39207218  T
Q  198 tcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttattacccgatctacatagttgtttaaaaatat 297  Q
    |||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||    || ||||||| || || |||||| |  |    
T  39207217 tcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgt 39207118  T
Q  298 ttttaatcatgttaatgttttatgtctt 325  Q
    ||||| ||||||||||||| ||||||||    
T  39207117 ttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 39370043 - 39370172
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||| | ||||||||||||||||||||| |||||||    
T  39370043 aatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttggaagacaagt 39370142  T
Q  101 caaggatcctaagttaaagttgaaaaaatt 130  Q
    ||||| || | ||| |||| |||| |||||    
T  39370143 caagggtcttgagtcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 39389236 - 39388986
Alignment:
Q  10 gacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 109  Q
    |||| ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||| |||| |||||||| |||||||||| ||| |||||||| |||||    
T  39389236 gacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcc 39389137  T
Q  110 taagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggccaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattca 206  Q
    | ||| |||| |||| ||||| |||  || |   | | |||  | | |||||||||||||| ||||    |||| | |||| ||||||||||||||||||    
T  39389136 tgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattca 39389037  T
Q  207 tctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatga 257  Q
    || |||||||||||||| |||   |||||| ||||||||||||||||||||    
T  39389036 tccagtttattgaaagaatttttttacaactgttcctcttaatgatgatga 39388986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 322
Target Start/End: Complemental strand, 39192404 - 39192266
Alignment:
Q  184 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttattacccgatctacatag 283  Q
    |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  ||||||||||||||||||| | ||||||| ||  ||||||| ||     
T  39192404 aatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaa 39192305  T
Q  284 ttgtttaaaaatatttttaatcatgttaatgttttatgt 322  Q
    || |||||||| ||||||||||||||||||||| |||||    
T  39192304 ttctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 322
Target Start/End: Complemental strand, 39198084 - 39197946
Alignment:
Q  184 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttattacccgatctacatag 283  Q
    |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  ||||||||||||||||||| | ||||||| ||  ||||||| ||     
T  39198084 aatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaa 39197985  T
Q  284 ttgtttaaaaatatttttaatcatgttaatgttttatgt 322  Q
    || |||||||| ||||||||||||||||||||| |||||    
T  39197984 ttctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39192548 - 39192439
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    |||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| ||||| |||    
T  39192548 aattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagt 39192449  T
Q  101 caaggatcct 110  Q
    ||||||||||    
T  39192448 caaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39198228 - 39198119
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    |||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| ||||| |||    
T  39198228 aattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagt 39198129  T
Q  101 caaggatcct 110  Q
    ||||||||||    
T  39198128 caaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 257
Target Start/End: Original strand, 39222934 - 39223037
Alignment:
Q  157 caaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatg 253  Q
    |||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||||    
T  39222934 caaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatgatg 39223033  T
Q  254 atga 257  Q
    ||||    
T  39223034 atga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  188 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttattacccgatctacatagt 284  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | ||||||| |||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  285 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 325  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 39468274 - 39468379
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    ||||||| | |||||| |||||| |  ||| ||||||||||  |||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||    
T  39468274 aatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattgaaggacaagt 39468373  T
Q  101 caagga 106  Q
    ||||||    
T  39468374 caagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 39414890 - 39414761
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    ||||||||| ||| |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| ||||||| |||||||||    
T  39414890 aatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttgaaggacaagt 39414791  T
Q  101 caaggatcctaagttaaagttgaaaaaatt 130  Q
     ||||||||| ||| |||| || |||||||    
T  39414790 taaggatcctgagtcaaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 39473517 - 39473409
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    ||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||  || |||    |||||||||||||||||||| ||| |||| ||||    
T  39473517 aatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagt 39473418  T
Q  101 caaggatcc 109  Q
    | |||||||    
T  39473417 cgaggatcc 39473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 39137820 - 39137895
Alignment:
Q  4 ttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 79  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137820 ttgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 39397954 - 39397852
Alignment:
Q  4 ttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaa 103  Q
    |||||| |||||||||| ||||||||| |||||||||| ||||||||||| ||||  ||||| |  ||||||||||||||||| ||| ||| | ||||||    
T  39397954 ttgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttgcaggtcgagtcaa 39397855  T
Q  104 gga 106  Q
    |||    
T  39397854 gga 39397852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 39222820 - 39222929
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    ||||||||| ||| |||||  ||||||||| | |||||||||||||||||| | |||| |||||| |||| || ||||| |||  ||||| |||||||||    
T  39222820 aatttgaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaaggacaagt 39222919  T
Q  101 caaggatcct 110  Q
    ||||||||||    
T  39222920 caaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 39459220 - 39459295
Alignment:
Q  34 aagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 109  Q
    |||||||||||||||||||||  || || ||| ||||||||||||| ||||| |||| ||||||||||||||||||    
T  39459220 aagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 39381588 - 39381510
Alignment:
Q  32 aaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 110  Q
    |||||||||| ||||||||||| || | || ||| |||||||||||||||||||||||| | |||||| ||||||||||    
T  39381588 aaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaagacaagacaaggatcct 39381510  T

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Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 321
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  184 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttattacccgatctacatag 283  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  | ||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  284 ttgtttaaaaatatttttaatcatgttaatgttttatg 321  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

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Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 39421940 - 39421832
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    ||||||||| ||  |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  ||||||| || |||    
T  39421940 aatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggagcactagt 39421841  T
Q  101 caaggatcc 109  Q
    |||||||||    
T  39421840 caaggatcc 39421832  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  184 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 229  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

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Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  184 aatcgggtaaatgttcttattcatctagtttattgaaa 221  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39494550 - 39494461
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 90  Q
    |||||||||||||  ||||||| |  |||| |||||| || |||||||||| ||| || |||||| | |||  |||||||||||||||||    
T  39494550 aatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttg 39494461  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  177 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 221  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 16113234 - 16113339
Alignment:
Q  1 aatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagt 100  Q
    ||||||||| ||||||||||||||| || | |||||||||| ||||||||||| |||  |||||| |||||||||||||||||||| ||| || ||||||    
T  16113234 aatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtacaagt 16113333  T
Q  101 caagga 106  Q
    ||||||    
T  16113334 caagga 16113339  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  184 aatcgggtaaatgttcttattcatctagtttattgaaa 221  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 19807770 - 19807845
Alignment:
Q  4 ttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 79  Q
    |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807770 ttgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 19807963 - 19808007
Alignment:
Q  185 atcgggtaaatgttcttattcatctagtttattgaaagagtttca 229  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttca 19808007  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 325
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  184 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttattacccgatctac 279  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||  || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  280 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 325  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  189 ggtaaatgttcttattcatctagtttattgaaagagtttca 229  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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