View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9595A_low_83 (Length: 323)
Name: NF9595A_low_83
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_83 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 55 - 322
Target Start/End: Original strand, 19438786 - 19439053
Alignment:
| Q |
55 |
caccgggttgcctttatgctagattgttgcaaacctgcaatatgttttctgaaattgtcctacttctatgcaggtacttcttaaatgtgattttcaacat |
154 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19438786 |
caccaggttgcccttatgctagattgttgcaaacctgcaatatgttttctgaaattgtcctacttctatgcaggtacttcttaaatgtgattttcaacat |
19438885 |
T |
|
| Q |
155 |
actcaacaagaaagcctacaattattttccatatccatagtatgttttcctcaatgattaacttcataattaggccaagataactctaaatttgtagctt |
254 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19438886 |
actcaacaagaaagtctacaattattttccatatccatagtatgttttcctcaatgattaacttcataattaggccaagataactctaaatttgtagctt |
19438985 |
T |
|
| Q |
255 |
tttatttattggttccttcacataacattatgctaatatttttcaaattattttcagctttgtttctg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19438986 |
tttatttattggttccttcacataacattatgctaatatttttcaaattattttcagctttgtttctg |
19439053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19438782 - 19438729
Alignment:
| Q |
1 |
tagaactcccgcatatgcagggtccgtgaccttttagtcatatgacaacaactt |
54 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19438782 |
tagagctcccgcatatgcagggtccgtgatcttttagtcatatgacaacaactt |
19438729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 34963147 - 34963221
Alignment:
| Q |
122 |
atgcaggtacttcttaaatgtgattttcaacatactcaacaagaaagcctacaattattttccatatccatagta |
196 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| || |||||||| ||| |||||||| || ||||| ||||| |
|
|
| T |
34963147 |
atgcaggtactttttgaatgtgattttcaacatcctaaacaagaagatctataattatttcccctatccttagta |
34963221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 18164884 - 18164920
Alignment:
| Q |
24 |
ccgtgaccttttagtcatatgacaacaacttcaccgg |
60 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
18164884 |
ccgtgacctttcagtcacatgacaacaacttcaccgg |
18164920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University