View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_92 (Length: 313)
Name: NF9595A_low_92
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_92 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 50 - 306
Target Start/End: Original strand, 48417268 - 48417525
Alignment:
| Q |
50 |
cttaaaagctcgagaattctgtctgtaatttatcatacacnnnnnnnnnaatcaaacaagtttgtgtttt-ttaaggagaatcaaacaagttcattaact |
148 |
Q |
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| T |
48417268 |
cttaaaagctagagaattctgtctgtaatttatcatacactttttttttaatcaaacaagtttgtgtttttttaaggagaatcaaacaagttcattaact |
48417367 |
T |
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| Q |
149 |
agtcaagataaactgtgatgattaaaaatggctaaaaatgtgagcatagaaatatagaaaataaacaaattatcttttgagctttagtttttgttacaag |
248 |
Q |
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| T |
48417368 |
agtcaaaataaactgtgatgattaaaaatggctaaaaatgtgagcatagaaatatagaaaataaacaaattatcttttgagctttagtttttgttacaag |
48417467 |
T |
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| Q |
249 |
ttttctatctctcctatctatttctttacattcaaacgcaacgtaaataagtttctca |
306 |
Q |
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| T |
48417468 |
ttttctatctctcctatctatttctttgcattcaaacgcaacgtaaataagttactca |
48417525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 48417195 - 48417227
Alignment:
| Q |
6 |
agcatctaagctagaacaaccatcacactattt |
38 |
Q |
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| T |
48417195 |
agcatctaagctagaacaaccatcacactattt |
48417227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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