View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9595A_low_95 (Length: 312)
Name: NF9595A_low_95
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_95 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 42852450 - 42852148
Alignment:
| Q |
11 |
tgagatggacatcagggatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatatttagatagt |
110 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42852450 |
tgagacggacataagggatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatatttagatggt |
42852351 |
T |
|
| Q |
111 |
tttacttcacatgctttgtttatattttctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctcatattt |
210 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42852350 |
tttacttcacatgctttgtttatattctctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctcatattt |
42852251 |
T |
|
| Q |
211 |
ttaatcatt-ttttatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgatgatga |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42852250 |
ttaatcatttttttatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgatgatga |
42852151 |
T |
|
| Q |
310 |
tga |
312 |
Q |
| |
|
||| |
|
|
| T |
42852150 |
tga |
42852148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 106 - 312
Target Start/End: Complemental strand, 42852630 - 42852424
Alignment:
| Q |
106 |
atagttttacttcacatgctttgtttatattttctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctca |
205 |
Q |
| |
|
|||||||| |||| ||| ||||||| ||||| |||| || ||||||||||||||| |||||| ||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
42852630 |
atagtttttcttcccatactttgttcatattccctat--cattcaaacttggatgttgtatggtggcatataatggtatccacaacatatcaaattctca |
42852533 |
T |
|
| Q |
206 |
tattttt--aatcattttttatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtga |
303 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||| |||| ||| | || |||||||| ||||||||||| |||||| |||| ||| || |
|
|
| T |
42852532 |
tatttttttaatcatgttttatgtataggcctgaaatatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataaggga |
42852433 |
T |
|
| Q |
304 |
tgatgatga |
312 |
Q |
| |
|
||||||||| |
|
|
| T |
42852432 |
tgatgatga |
42852424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 42852155 - 42852092
Alignment:
| Q |
27 |
gatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatg |
90 |
Q |
| |
|
|||||||||| ||||||| || |||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
42852155 |
gatgatgatggactacctccactggaagccaatacaaacaggatacaaccttttgagctgtatg |
42852092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University