View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595_low_2 (Length: 472)

Name: NF9595_low_2
Description: NF9595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595_low_2
NF9595_low_2
[»] chr3 (11 HSPs)
chr3 (1-241)||(11427105-11427345)
chr3 (1-99)||(11430984-11431082)
chr3 (249-328)||(19766009-19766088)
chr3 (243-298)||(11394007-11394062)
chr3 (265-350)||(31687881-31687966)
chr3 (399-439)||(31688056-31688096)
chr3 (254-298)||(46233973-46234017)
chr3 (399-439)||(31896771-31896811)
chr3 (399-439)||(31912480-31912520)
chr3 (248-311)||(52130783-52130846)
chr3 (399-439)||(31946128-31946168)
[»] chr1 (12 HSPs)
chr1 (254-372)||(31771310-31771428)
chr1 (254-376)||(7608318-7608440)
chr1 (308-401)||(7608224-7608317)
chr1 (308-401)||(31771212-31771305)
chr1 (396-454)||(7608097-7608155)
chr1 (396-452)||(31771087-31771143)
chr1 (254-311)||(1721556-1721613)
chr1 (244-311)||(17726023-17726089)
chr1 (253-298)||(32440659-32440704)
chr1 (253-311)||(22368196-22368254)
chr1 (100-149)||(5878780-5878828)
chr1 (100-149)||(5874891-5874939)
[»] scaffold0152 (1 HSPs)
scaffold0152 (254-350)||(10195-10291)
[»] chr2 (5 HSPs)
chr2 (240-311)||(997806-997877)
chr2 (253-328)||(4453777-4453852)
chr2 (253-298)||(9208569-9208614)
chr2 (249-288)||(7161811-7161850)
chr2 (244-307)||(3625169-3625234)
[»] chr4 (5 HSPs)
chr4 (244-311)||(32651267-32651334)
chr4 (244-328)||(38467690-38467775)
chr4 (256-328)||(3649873-3649945)
chr4 (246-309)||(41810163-41810226)
chr4 (254-289)||(26720237-26720272)
[»] scaffold0003 (3 HSPs)
scaffold0003 (254-350)||(36966-37062)
scaffold0003 (249-289)||(43199-43239)
scaffold0003 (399-438)||(36837-36876)
[»] chr6 (3 HSPs)
chr6 (243-288)||(31444760-31444805)
chr6 (249-289)||(27444122-27444162)
chr6 (248-296)||(33054175-33054223)
[»] scaffold0014 (1 HSPs)
scaffold0014 (247-289)||(32608-32650)
[»] chr8 (2 HSPs)
chr8 (254-328)||(44663663-44663737)
chr8 (254-328)||(35348991-35349066)
[»] chr7 (3 HSPs)
chr7 (249-298)||(16262692-16262741)
chr7 (254-296)||(21820186-21820228)
chr7 (100-133)||(20431259-20431292)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 11427345 - 11427105
Alignment:
Q  1 ttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgactgatgcttccaatgtaatttctttgattaacgtgttttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  11427345 ttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgaccgatgcttcgagtgtaatttctttgattaacgtgttttcttt 11427246  T
Q  101 gacaattaataatataaggtatgattcaatatttatctttgtgtgatgaccactaatttaatttgaagctgattttagggagcatacatcattttcatag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  11427245 gacaattaataatataaggtatgattcaatatttatctttgtgtgatgaccactaatttaatttgaaggtgattttagggagcatacatcattttcatgg 11427146  T
Q  201 tatcaagatgcaaaactaattacattttgcaatcaggtaat 241  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  11427145 tatcaagatgcaaaactaattatattttgcaatcaggtaat 11427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11431082 - 11430984
Alignment:
Q  1 ttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgactgatgcttccaatgtaatttctttgattaacgtgttttctt 99  Q
    |||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||  |||||||| | |||||||| ||||||||||||||||||||    
T  11431082 ttctcatgcttttgttgtggatgatcttttctctgtcctttgtttcgtggttggcgatcgatgcttcgagtgtaatttatttgattaacgtgttttctt 11430984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 19766009 - 19766088
Alignment:
Q  249 atctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 328  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| || || ||||||| |||||    
T  19766009 atctaatctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcctacttttttaggcgccaa 19766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 11394007 - 11394062
Alignment:
Q  243 tatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcc 298  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||    
T  11394007 tatctaatctaatctaacttatttctaatcctagttaacactccaattatcactcc 11394062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 350
Target Start/End: Original strand, 31687881 - 31687966
Alignment:
Q  265 tcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 350  Q
    ||||| |||||||||||||||||| | ||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  31687881 tcctagtcctagttaacactccaacttacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 31687966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 31688056 - 31688096
Alignment:
Q  399 attgtaaatgacaaataattaatgttattggtttccaataa 439  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31688056 attgtaaatgacaaataattaatgttatcggtttccaataa 31688096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 46234017 - 46233973
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaataacactcc 298  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaattatcactcc 46233973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 31896811 - 31896771
Alignment:
Q  399 attgtaaatgacaaataattaatgttattggtttccaataa 439  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31896811 attgtaaatgacaaataattaatgttatcgatttccaataa 31896771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 31912520 - 31912480
Alignment:
Q  399 attgtaaatgacaaataattaatgttattggtttccaataa 439  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31912520 attgtaaatgacaaataattaatgttatcgatttccaataa 31912480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 52130783 - 52130846
Alignment:
Q  248 aatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 311  Q
    |||||| ||||||||||| |||||||||| ||||||||||| || ||||   ||||||||||||    
T  52130783 aatctagtctaacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattct 52130846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 31946168 - 31946128
Alignment:
Q  399 attgtaaatgacaaataattaatgttattggtttccaataa 439  Q
    ||||||||||||||||||| |||||||| | ||||||||||    
T  31946168 attgtaaatgacaaataatgaatgttatcgatttccaataa 31946128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 254 - 372
Target Start/End: Complemental strand, 31771428 - 31771310
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatc 31771329  T
Q  354 tgtttgccattttttcctc 372  Q
    ||||||| |||||||||||    
T  31771328 tgtttgcaattttttcctc 31771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 254 - 376
Target Start/End: Complemental strand, 7608440 - 7608318
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 353  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatc 7608341  T
Q  354 tgtttgccattttttcctccttt 376  Q
    ||||||| |||||||||||||||    
T  7608340 tgtttgcaattttttcctccttt 7608318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 7608317 - 7608224
Alignment:
Q  308 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 401  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608317 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 7608224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 31771305 - 31771212
Alignment:
Q  308 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 401  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31771305 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtatt 31771212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 396 - 454
Target Start/End: Complemental strand, 7608155 - 7608097
Alignment:
Q  396 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctcc 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608155 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctcc 7608097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 452
Target Start/End: Complemental strand, 31771143 - 31771087
Alignment:
Q  396 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctct 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771143 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctct 31771087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 1721556 - 1721613
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 311  Q
    |||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattct 1721613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 17726023 - 17726089
Alignment:
Q  244 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 311  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  17726023 atctaatctaatctaa-ttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 17726089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 32440704 - 32440659
Alignment:
Q  253 aatctaacttattcctaatcctagttaacactccaaataacactcc 298  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  32440704 aatctaacttattcctaatcctagttaacactccaattatcactcc 32440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 22368254 - 22368196
Alignment:
Q  253 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 311  Q
    |||||||||||||||||||||||||||||||| ||| || ||||   ||||||||||||    
T  22368254 aatctaacttattcctaatcctagttaacacttcaattatcacttaaaaccctaattct 22368196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 5878828 - 5878780
Alignment:
Q  100 tgacaattaataatataaggtatgattcaatatttatctttgtgtgatga 149  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  5878828 tgacaattgaaaatataaggtatgattcaatatttat-tttgtgtgatga 5878780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 5874939 - 5874891
Alignment:
Q  100 tgacaattaataatataaggtatgattcaatatttatctttgtgtgatga 149  Q
    |||||||| | ||||||||||||||||||||||||||  |||||||||||    
T  5874939 tgacaattgacaatataaggtatgattcaatatttat-gttgtgtgatga 5874891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 10195 - 10291
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 350  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  10195 atctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 10291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 997806 - 997877
Alignment:
Q  240 atctatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || | || ||||||||||||||    
T  997806 atctatctaatctaatctaacttattcctaatcctagttaacacttcaattagccctgccaaccctaattct 997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 4453777 - 4453852
Alignment:
Q  253 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 328  Q
    |||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  4453777 aatctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 4453852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 9208569 - 9208614
Alignment:
Q  253 aatctaacttattcctaatcctagttaacactccaaataacactcc 298  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  9208569 aatctaacttattcctaatcctagttaacactccaattatcactcc 9208614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 7161811 - 7161850
Alignment:
Q  249 atctaatctaacttattcctaatcctagttaacactccaa 288  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7161811 atctaatctaacttatttctaatcctagttaacactccaa 7161850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 3625169 - 3625234
Alignment:
Q  244 atctaatctaa--tctaacttattcctaatcctagttaacactccaaataacactcccaaccctaa 307  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||| ||||  | ||||||||||    
T  3625169 atctaatctaacttctaacttattcctaatcctaattaacactccaattaaccatgccaaccctaa 3625234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 32651334 - 32651267
Alignment:
Q  244 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  32651334 atctaatctaatctaacttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 32651267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 38467775 - 38467690
Alignment:
Q  244 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 328  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| |||||||   |||||||||||| | ||||||||| |||||    
T  38467775 atctaatctaatctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaa 38467690  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 3649873 - 3649945
Alignment:
Q  256 ctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 328  Q
    ||||||||||||||||||||||||||||||||| |||||||   |||||||| ||| || ||||||| |||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaa 3649945  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 41810163 - 41810226
Alignment:
Q  246 ctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaatt 309  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||||   ||||||||||    
T  41810163 ctaatctaatctaacttatttctaatcctagttaacactccaattaccacttaaaaccctaatt 41810226  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 26720237 - 26720272
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaa 289  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaaa 26720272  T

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Target: scaffold0003 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 350
Target Start/End: Complemental strand, 37062 - 36966
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 350  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | || ||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaattcttcttttttaggcgccaaacaatcct-agcccttggatcta 36966  T

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Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 43239 - 43199
Alignment:
Q  249 atctaatctaacttattcctaatcctagttaacactccaaa 289  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43239 atctaatctaacttattcctaatcgtagttaacactccaaa 43199  T

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Target: scaffold0003; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 438
Target Start/End: Complemental strand, 36876 - 36837
Alignment:
Q  399 attgtaaatgacaaataattaatgttattggtttccaata 438  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  36876 attgtaaatgacaaataattaatgttatcggtttccaata 36837  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 31444760 - 31444805
Alignment:
Q  243 tatctaatctaatctaacttattcctaatcctagttaacactccaa 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444760 tatctaatctaatctaacttattcctaatcctagttaacactccaa 31444805  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 27444122 - 27444162
Alignment:
Q  249 atctaatctaacttattcctaatcctagttaacactccaaa 289  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27444122 atctaatctaacttattcctaatcgtagttaacactccaaa 27444162  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 33054223 - 33054175
Alignment:
Q  248 aatctaatctaacttattcctaatcctagttaacactccaaataacact 296  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  33054223 aatctaatctaacttattcctaatcctaattaacactacaattaacact 33054175  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 32608 - 32650
Alignment:
Q  247 taatctaatctaacttattcctaatcctagttaacactccaaa 289  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32608 taatctaatctaacttatttctaatcctagttaacactccaaa 32650  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 44663737 - 44663663
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 328  Q
    ||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  44663737 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 44663663  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 35348991 - 35349066
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 328  Q
    |||||||||||| |||||||||||||||||||||| |||||||   || ||||||||| | ||||||||| |||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaa 35349066  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 16262741 - 16262692
Alignment:
Q  249 atctaatctaacttattcctaatcctagttaacactccaaataacactcc 298  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  16262741 atctaatctaacttattcctaatcctagttaacacttcaattatcactcc 16262692  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 21820228 - 21820186
Alignment:
Q  254 atctaacttattcctaatcctagttaacactccaaataacact 296  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaattaacact 21820186  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 20431292 - 20431259
Alignment:
Q  100 tgacaattaataatataaggtatgattcaatatt 133  Q
    |||||||||| |||||||||||||||||||||||    
T  20431292 tgacaattaacaatataaggtatgattcaatatt 20431259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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