View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595_low_4 (Length: 241)
Name: NF9595_low_4
Description: NF9595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 7089049 - 7088827
Alignment:
| Q |
19 |
tgtctttgcttccatcgagttgcaagttgcaacaaaaggttcatatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagcaac |
118 |
Q |
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| T |
7089049 |
tgtcttcgcttccatcgagttgcaagttgcaacaaaaggttcatatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagcaac |
7088950 |
T |
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| Q |
119 |
tgtatcttatgaactcaatgttcttcgtacgagagggccaaggcgaatgcggagtacaatgcacttaatccccatatcttcagtccaagaaggaggaact |
218 |
Q |
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| T |
7088949 |
tgtatcttatgaactcaatgttcttcgtacgagaggtccaaggcgaatgcggagtacaatgcacttaatccccatatcttcagtccaagaaggaggaact |
7088850 |
T |
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| Q |
219 |
gctcctactcctatggaatttac |
241 |
Q |
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| T |
7088849 |
gctcctactcctatggaatttac |
7088827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 7668389 - 7668293
Alignment:
| Q |
21 |
tctttgcttccatcgagttgcaagttgcaacaaaaggttc--atatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagc |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||| |||||||||| |||||| |||||||||||| |
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| T |
7668389 |
tcttcgcttccatcgagttgcaagttgcaacaaaaggtccatatatgaagcaagtatttcctagggttgctcctgctactgctagctataaagtagc |
7668293 |
T |
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