View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595_low_6 (Length: 225)
Name: NF9595_low_6
Description: NF9595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 40092480 - 40092675
Alignment:
| Q |
12 |
ttattctagctcatattcttcatctaaatcttcatacatatcccaaaacacgaagaaagcaaatggatcaatgaaaaatgaatacccttttgaatccaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092480 |
ttattctagctcatattcttcatctaaatcttcatacatatcccaaaacacgaagaaagcaaatggatcaatgaaaaatgaatacccttttgaatccaaa |
40092579 |
T |
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| Q |
112 |
tattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatac |
207 |
Q |
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| T |
40092580 |
tattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctgccaaagtatac |
40092675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 40121316 - 40121498
Alignment:
| Q |
25 |
tattcttcatctaaatcttcatacatatcccaaaacacgaagaaagcaaatggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttc |
124 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40121316 |
tattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttgtcttc |
40121415 |
T |
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| Q |
125 |
actcagtaagaaagtcaccaacaaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatac |
207 |
Q |
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| T |
40121416 |
actcagtaagaaagtcaccaacaaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatac |
40121498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 40124962 - 40125147
Alignment:
| Q |
22 |
tcatattcttcatctaaatcttcatacatatcccaaaacacgaagaaagcaaatggatcaatgaaaaatgaatacccttttgaatccaaatattcttggc |
121 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||| |||||| ||||| | || | | |||||||||| |
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| T |
40124962 |
tcatattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaatggatcaattaaacatgaatgcccttgtcaaactcattattcttggc |
40125061 |
T |
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| Q |
122 |
ttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatac |
207 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
40125062 |
ttcactcagtaagaaaatcacctgtaaagacatggaataagaagttaccaatagcaccaatggcaccaacacctgccaaagtatac |
40125147 |
T |
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