View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9596_low_1 (Length: 465)
Name: NF9596_low_1
Description: NF9596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9596_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 34755629 - 34756066
Alignment:
| Q |
18 |
gctgttgagtttcagcactattagccatgaccttaagaaccttacggatctctcgactcctcaatggcctcaacttgttaatagtggtggcgttgagcag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755629 |
gctgttgagtttcagcactattagccatgaccttaagaaccttacggatctctcggctcctcaatggcctcaacttgttaatagtggtggcgttgagcag |
34755728 |
T |
|
| Q |
118 |
gtcgttcatgataagctttctaataaacttccagtaaggtccaaatggaaccatagcaacagagttgtcataggtaagacgactaatagcagaggtttgg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755729 |
gtcgttcatgataagctttctaataaacttccagtaaggtccaaatggaaccatagcaacagagttgtcataggtaagacgactaatagcagaggtttgg |
34755828 |
T |
|
| Q |
218 |
aaccttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggggtcgaggcaacaatggtaggcatggaaccaaagtaaagag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34755829 |
aaccttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggggttgaggcaacaatggtaggcatggaaccaaagtaaagag |
34755928 |
T |
|
| Q |
318 |
tgtacaaagggccataacgttctcctaacttgataagagtgtggtgaagaagagggttatccaaaaggtgaagatgacctatgaatggaagacgtggttt |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
34755929 |
tgtacaaagggccataacgttctcctaacttgataagagtgtggtgaagaagagggttatccaaaaggtgaagatgaccaatggatggaagacgaggttt |
34756028 |
T |
|
| Q |
418 |
agggcttggtggattaggaagatggcgaagtgcctttg |
455 |
Q |
| |
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|| || || ||||| ||||| |||||||| ||||||| |
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| T |
34756029 |
gggactcggaggattgggaaggtggcgaagagcctttg |
34756066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 34780507 - 34780070
Alignment:
| Q |
18 |
gctgttgagtttcagcactattagccatgaccttaagaaccttacggatctctcgactcctcaatggcctcaacttgttaatagtggtggcgttgagcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
34780507 |
gctgttgagtttcagcactattagccatgaccttaagaaccttaaggatttctcggctcctcaatggcctcaatttgttaacagtggtggcgttgagcaa |
34780408 |
T |
|
| Q |
118 |
gtcgttcatgataagctttctaataaacttccagtaaggtccaaatggaaccatagcaacagagttgtcataggtaagacgactaatagcagaggtttgg |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
34780407 |
gtcgttcatgataagctttctaataaacttccaataaggtgcaaatggaaccatagcaacagaattatcataggtaagacgactaatagcagaggtttgg |
34780308 |
T |
|
| Q |
218 |
aaccttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggggtcgaggcaacaatggtaggcatggaaccaaagtaaagag |
317 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||| |
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|
| T |
34780307 |
aatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatgcaacaacggtaggcatggaaccaaagtaaagag |
34780208 |
T |
|
| Q |
318 |
tgtacaaagggccataacgttctcctaacttgataagagtgtggtgaagaagagggttatccaaaaggtgaagatgacctatgaatggaagacgtggttt |
417 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780207 |
tgtacaaagggccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaaggtgaagatgacctatgaatggaagacgtggttt |
34780108 |
T |
|
| Q |
418 |
agggcttggtggattaggaagatggcgaagtgcctttg |
455 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||| |
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|
| T |
34780107 |
agggcttggtggatttggaaggtggcgaagagcctttg |
34780070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 34763605 - 34764042
Alignment:
| Q |
18 |
gctgttgagtttcagcactattagccatgaccttaagaaccttacggatctctcgactcctcaatggcctcaacttgttaatagtggtggcgttgagcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
34763605 |
gctgttgagtttcagcactattagccatgaccttaagaaccttaaggatttctcggctcctcaatggcctcaatttgttaacagtggtggcgttgagcaa |
34763704 |
T |
|
| Q |
118 |
gtcgttcatgataagctttctaataaacttccagtaaggtccaaatggaaccatagcaacagagttgtcataggtaagacgactaatagcagaggtttgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
34763705 |
gtcgttcatgataagctttctaataaacttccaataaggtgcaaatggaaccatagcaacagatttttcataggtaagacgactaatagcagaggtttgg |
34763804 |
T |
|
| Q |
218 |
aaccttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggggtcgaggcaacaatggtaggcatggaaccaaagtaaagag |
317 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||| |
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|
| T |
34763805 |
aatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatgcaacaacggtaggcatggaaccaaagtaaagag |
34763904 |
T |
|
| Q |
318 |
tgtacaaagggccataacgttctcctaacttgataagagtgtggtgaagaagagggttatccaaaaggtgaagatgacctatgaatggaagacgtggttt |
417 |
Q |
| |
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|||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
34763905 |
tgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaagatgaagatgaccaatgaaaggaagacgtggttt |
34764004 |
T |
|
| Q |
418 |
agggcttggtggattaggaagatggcgaagtgcctttg |
455 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34764005 |
agggcttggtggatttggaagatggcgaagtgcctttg |
34764042 |
T |
|
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