View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9596_low_11 (Length: 283)
Name: NF9596_low_11
Description: NF9596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9596_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 38793548 - 38793421
Alignment:
| Q |
13 |
cagacggagatgattgagaagtggagagtaatggcggatctgagtgattttacggttaccggtggcggcgaaagtagcggaacggagagcaacgcaattg |
112 |
Q |
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| T |
38793548 |
cagacggggatgattgagaagtggagagtaatggcggatctgagtgattttacggttaccggtggcggcgaaagtggcggaacggagagcgacgcaattg |
38793449 |
T |
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| Q |
113 |
gatccggtaagagaagccattgctgttt |
140 |
Q |
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| T |
38793448 |
gatccggtaagagaagccattgctgttt |
38793421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 46496162 - 46496037
Alignment:
| Q |
15 |
gacggagatgattgagaagtggagagtaatggcggatctgagtgattttacggttaccggtggcggcgaaagtagcggaacggagagcaacgcaattgga |
114 |
Q |
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| T |
46496162 |
gacggagatgattgagaagcggagagtaatggcggatctgagtgattttacaattaccgacagcggcaaaagtggcggaacggagagaaacacaattgga |
46496063 |
T |
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| Q |
115 |
tccggtaagagaagccattgctgttt |
140 |
Q |
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| T |
46496062 |
tccagtaagagaaaccattactgttt |
46496037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 38793361 - 38793289
Alignment:
| Q |
200 |
gttttgagtttttaaaatgcgttgtgtttgttagtactttggaagctccggagtgtgagaatgttgttactga |
272 |
Q |
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| T |
38793361 |
gttttgagtttttaaaatgcgttgtgtttgttagtactttggaagctccggagtgtgagaatgttgttactga |
38793289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 46495989 - 46495923
Alignment:
| Q |
200 |
gttttgagtttttaaaatgcgttgtgtttgttagtactttggaagctccggagtgtgagaatgttgtta |
268 |
Q |
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| T |
46495989 |
gttttgagtttttaaaatgtg--gtgttggttagtgctttggaagctccagattgtgagaaagttgtta |
46495923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 13876112 - 13876225
Alignment:
| Q |
20 |
agatgattgagaagtggagagtaatggcggatctgagtgattttacggttaccggtggcggcgaaagtagcggaacggagagcaacgcaattggatccgg |
119 |
Q |
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| T |
13876112 |
agatgattgagaagcagagagtaacggcggatctgagtgattttacgattaccgacagcggcaaaagtggcggaacggagagcagcgcaattggatccgg |
13876211 |
T |
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| Q |
120 |
taagagaagccatt |
133 |
Q |
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| T |
13876212 |
taagagaaaccatt |
13876225 |
T |
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