View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9596_low_12 (Length: 259)
Name: NF9596_low_12
Description: NF9596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9596_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 31103663 - 31103440
Alignment:
| Q |
23 |
gagcacccaaccagtagcacgnnnnnnnggtaaccaatagcttgtttgggtcactgattaaaattaaataaacgggaaagacgattactttgcgtgtagg |
122 |
Q |
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| T |
31103663 |
gagcacccaaccagtagcatgtttttctggtaaccaatagcttgtttgggtcactgattaaaattaaataaacgggaaagacgattactttgcgtgtagg |
31103564 |
T |
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| Q |
123 |
gttcaaagggctgaaatgcttgctgtgatttgttgcagggtctgttggtacgtgaatttgtccgtgttgacagacacttcataaatcattcttcaaaaga |
222 |
Q |
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| T |
31103563 |
gttcaaagggctgaaatgcttgctgtgatttgtcgcagggtctgttggtacgtgaatttgtctgtgttgatggacacttcataaatcattcttcaaaaga |
31103464 |
T |
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| Q |
223 |
tggtttgattactcagacttgtct |
246 |
Q |
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| T |
31103463 |
cggtttgattactcagacgtgtct |
31103440 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 8119292 - 8119226
Alignment:
| Q |
127 |
aaagggctga-aatgcttgctgtgatttgttgcagggtctgttggtacgtgaat-ttgtccgtgttg |
191 |
Q |
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| T |
8119292 |
aaagggctgataatgcttgctgtgatatgttgcaggggctgttggtacatgaatcttgttcgtgttg |
8119226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 30420230 - 30420174
Alignment:
| Q |
136 |
aaatgcttgctgtgatttgttgcagggtctgttggtacgtgaat-ttgtccgtgttg |
191 |
Q |
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| T |
30420230 |
aaatgctcgcagtgatttgttgcaggggttgttggtacgtgaatcttgtccgtgttg |
30420174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 22377419 - 22377472
Alignment:
| Q |
137 |
aatgcttgctgtgatttgttgcagggtctgttggtacgtgaat-ttgtccgtgtt |
190 |
Q |
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| T |
22377419 |
aatgcttgctgtgatttgtcgcaggg-ctgttggtacatgaatcttgtccgtgtt |
22377472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 29758290 - 29758356
Alignment:
| Q |
127 |
aaagggctgaaa-tgcttgctgtgatttgttgcagggtctgttggtacgtgaat-ttgtccgtgttg |
191 |
Q |
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| T |
29758290 |
aaagggctgaaaatgcgcgctgtgaattgtcgcaggggctgttggtacgtgaatcttgtccgtgttg |
29758356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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