View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9596_low_13 (Length: 251)
Name: NF9596_low_13
Description: NF9596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9596_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 38793545 - 38793307
Alignment:
| Q |
13 |
taattctcaattcaattacctctaatttcaatgcaaaagaaaataatagaaaaacttccatgaatccgtgcaacagaaggaacaagagcatgatcatacc |
112 |
Q |
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| T |
38793545 |
taattctcaattcaattacctctaatttcaatgcaaaagaaaataatagaaaaacttccatgaatccgtgcaacagaaggaacaagagcatgatcacacc |
38793446 |
T |
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| Q |
113 |
aattggcaattgatcactatattacaacttaattaacaatgaaaatcacaattcaagaacaattacagcttgcaaaccgccaataaaacataaaccccga |
212 |
Q |
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| T |
38793445 |
aattggcaattgatcactatattacaacttaattaacaatgaaaatcacaattcaagaacaattacagcttgcaaacccccaataaaacataaaccccga |
38793346 |
T |
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| Q |
213 |
taaacaaaacagaattttgaataaaacgggtaaaaattg |
251 |
Q |
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| T |
38793345 |
taaacaaaacagaattttgaataaaacgggtaaaaattg |
38793307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 38772200 - 38772134
Alignment:
| Q |
96 |
aagagcatgatcataccaattggcaa-ttgatcactatattacaacttaattaacaatgaaaatcac |
161 |
Q |
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| T |
38772200 |
aagagcatgatcacaacaattagcaaattgatcactgtattacaacttaattaacaatgaaaatcac |
38772134 |
T |
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